Basic Information
Gene Model:Bol010454
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000222
Sequence:
 | 
Gene Structure
Nucleotide Length:624 bp
Transcript Length:624 bp
Protein Length:207 aa
Strand:+
Location:C05: 3408427 : 3409050
Gene CDSs(1): 1-624 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54171DNA-binding domain 29 90 6.3e-22IPR016177DNA-binding, integrase-type
Gene3DG3DSA:3.30.730.10no description 29 90 8.7e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 30 93 2.3e-24IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 66 78 NANot foundNot found
Segsegseg 139 146 NANot foundNot found
ProfileScanPS51032AP2_ERF 30 87 22.102IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 29 80 3.5e-17IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LN861e-88DRE1F_ARATH Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1
TrEMBL
Best HitE_value Description
B2BI354e-67B2BI35_THEHA Putative C-repeat binding factor OS=Thellungiella halophila GN=DREB1E PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G254701e-39K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14532(5 genes,4 taxa):Brassica oleraceaBol010454
ORTHOMCL14532(5 genes,4 taxa):Brassica rapaBra019777
ORTHOMCL14532(5 genes,4 taxa):Vitis viniferaGSVIVT01019860001
ORTHOMCL14532(5 genes,4 taxa):Populus trichocarpaPOPTR_0001s08710.1
ORTHOMCL14532(5 genes,4 taxa):Populus trichocarpaPOPTR_0001s08720.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:3354166..3957841 (-)A.thalianaChr1:22997826..23392851 (+)24
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:3356198..3871523 (+)B.rapaA09:3728641..3966665 (+)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1261042899444291017Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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