Basic Information
Gene Model:Bol010350
Gene Family:U-box Gene Family
Chromosome:C05
Scaffold:Scaffold000223
Sequence:
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Gene Structure
Nucleotide Length:1780 bp
Transcript Length:1404 bp
Protein Length:467 aa
Strand:+
Location:C05: 30543476 : 30545255
Gene CDSs(2): 1-340 | 717-1780 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF04564U-box 9 83 2.2e-32IPR003613U box domain
Segsegseg 390 405 NANot foundNot found
Segsegseg 157 162 NANot foundNot found
Segsegseg 318 330 NANot foundNot found
HMMSmartSM00504no description 13 76 1.1e-33IPR003613U box domain
Gene3DG3DSA:3.30.40.10no description 6 83 1.9e-23Not foundNot found
superfamilySSF48371ARM repeat 49 431 2.6e-16IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 6 83 4.3e-18Not foundNot found
HMMPantherPTHR22904TPR REPEAT CONTAININ 9 82 4.3e-14Not foundNot found
HMMPantherPTHR22904:SF27CARBOXY TERMINUS OF 9 82 4.3e-14Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9SF150.0PUB24_ARATH U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DGA60.0B9DGA6_ARATH AT3G11840 protein (Fragment) OS=Arabidopsis thaliana GN=AT3G11840 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ssl:SS1G_139764e-10K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7846(9 genes,5 taxa):Arabidopsis thalianaAT3G11840.1
ORTHOMCL7846(9 genes,5 taxa):Brassica oleraceaBol007270
ORTHOMCL7846(9 genes,5 taxa):Brassica oleraceaBol010350
ORTHOMCL7846(9 genes,5 taxa):Brassica rapaBra001424
ORTHOMCL7846(9 genes,5 taxa):Brassica rapaBra034806
ORTHOMCL7846(9 genes,5 taxa):Brassica rapaBra038683
ORTHOMCL7846(9 genes,5 taxa):Populus trichocarpaPOPTR_0006s21920.1
ORTHOMCL7846(9 genes,5 taxa):Populus trichocarpaPOPTR_0016s07020.1
ORTHOMCL7846(9 genes,5 taxa):Carica papayaevm.TU.supercontig_104.19
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:30210231..30748078 (-)A.thalianaChr5:1877333..2169391 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:30231981..30762141 (+)B.rapaA10:2697955..2985115 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1184037364003738257Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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