Basic Information
Gene Model:Bol010287
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000223
Sequence:
 | 
Gene Structure
Nucleotide Length:4116 bp
Transcript Length:1398 bp
Protein Length:465 aa
Strand:+
Location:C05: 30124660 : 30128775
Gene CDSs(5): 1-301 | 415-782 | 1094-1330 | 1402-1554 | 3778-4116 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 75 321 3e-36IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 70 350 1.6e-56IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 50 347 5.2e-70IPR001932Protein phosphatase 2C-related
Segsegseg 190 201 NANot foundNot found
PatternScanPS01032PP2C 75 83 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene3DG3DSA:3.60.40.10no description 71 353 1.1e-57IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 30 420 2.4e-154Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 30 420 2.4e-154IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LHJ90.0P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q4091e-172A7Q409_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029494001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429703e-28K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6172(10 genes,6 taxa):Arabidopsis thalianaAT3G12620.1
ORTHOMCL6172(10 genes,6 taxa):Brassica oleraceaBol007333
ORTHOMCL6172(10 genes,6 taxa):Brassica oleraceaBol010287
ORTHOMCL6172(10 genes,6 taxa):Brassica rapaBra034749
ORTHOMCL6172(10 genes,6 taxa):Brassica rapaBra038738
ORTHOMCL6172(10 genes,6 taxa):Vitis viniferaGSVIVT01032637001
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0008s04670.1
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s22180.1
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s22180.2
ORTHOMCL6172(10 genes,6 taxa):Carica papayaevm.TU.supercontig_1.284
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:28425446..30798882 (-)A.thalianaChr3:3617523..4902628 (+)200
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:29596563..30798882 (+)B.rapaA05:2022902..2742087 (+)125
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1262040092754011347Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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