Basic Information
Gene Model:Bol010199
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000224
Sequence:
 | 
Gene Structure
Nucleotide Length:1307 bp
Transcript Length:936 bp
Protein Length:311 aa
Strand:+
Location:C08: 15093409 : 15094715
Gene CDSs(3): 1-238 | 349-1015 | 1277-1307 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03151TPT 161 272 5.7e-21IPR004853Protein of unknown function DUF250
superfamilySSF103481Multidrug resistance 35 145 2.9e-06Not foundNot found
Segsegseg 288 303 NANot foundNot found
Segsegseg 234 245 NANot foundNot found
Segsegseg 71 88 NANot foundNot found
Segsegseg 123 141 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
O497261e-134PUP9_ARATH Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GH851e-91B9GH85_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_173703 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_335Bol010199 Bol010200 Bol010202 Bol010203 Bol010204 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:14538083..15154808 (+)B.rapaA05:16082523..16556970 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G182201007876810080109Chr4Subgenome_II78
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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