Basic Information
Gene Model:Bol010147
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000225
Sequence:
 | 
Gene Structure
Nucleotide Length:1047 bp
Transcript Length:1047 bp
Protein Length:348 aa
Strand:-
Location:C06: 24982407 : 24983453
Gene CDSs(1): 1-1047 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 180 284 1.4e-26IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 57 106 7.2e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 212 225 NANot foundNot found
ProfileScanPS51032AP2_ERF 58 115 16.871IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 181 292 12.379IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 168 306 2.4e-27Not foundNot found
Gene3DG3DSA:3.30.730.10no description 57 118 3.2e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 58 121 2.1e-17IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 57 118 4.4e-16IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6P51e-125RAVL2_ARATH AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYV25e-80B9GYV2_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G506801e-124K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12208(7 genes,5 taxa):Brassica oleraceaBol010147
ORTHOMCL12208(7 genes,5 taxa):Brassica rapaBra018854
ORTHOMCL12208(7 genes,5 taxa):Vitis viniferaGSVIVT01023582001
ORTHOMCL12208(7 genes,5 taxa):Populus trichocarpaPOPTR_0003s21810.1
ORTHOMCL12208(7 genes,5 taxa):Populus trichocarpaPOPTR_0006s20040.1
ORTHOMCL12208(7 genes,5 taxa):Populus trichocarpaPOPTR_0018s11780.1
ORTHOMCL12208(7 genes,5 taxa):Carica papayaevm.TU.contig_32277.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25332003 (-)A.thalianaChr3:6879617..7187521 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25384509 (+)B.rapaA06:2237156..2472723 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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