Basic Information
Gene Model:Bol010143
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000225
Sequence:
 | 
Gene Structure
Nucleotide Length:1574 bp
Transcript Length:936 bp
Protein Length:311 aa
Strand:+
Location:C06: 24938688 : 24940261
Gene CDSs(5): 1-163 | 250-288 | 650-678 | 770-951 | 1052-1574 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05726Pirin_C 183 293 4.9e-49IPR008778Pirin, C-terminal
HMMPIRPIRSF006232Pirin 13 296 2e-105IPR012093Pirin
HMMPfamPF02678Pirin 29 130 7.8e-57IPR003829Pirin, N-terminal
superfamilySSF51182RmlC-like cupins 11 306 4.7e-87IPR011051Cupin, RmlC-type
HMMPantherPTHR13903PIRIN-RELATED 63 306 5.7e-93IPR012093Pirin
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LPS91e-163PIRL1_ARATH Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6TLR81e-118C6TLR8_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G505901e-163K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11266(7 genes,7 taxa):Arabidopsis thalianaAT1G50590.1
ORTHOMCL11266(7 genes,7 taxa):Brassica oleraceaBol010143
ORTHOMCL11266(7 genes,7 taxa):Brassica rapaBra018859
ORTHOMCL11266(7 genes,7 taxa):Vitis viniferaGSVIVT01037758001
ORTHOMCL11266(7 genes,7 taxa):Oryza sativaOs09t0484800-01
ORTHOMCL11266(7 genes,7 taxa):Sorghum bicolorSb02g028180.1
ORTHOMCL11266(7 genes,7 taxa):Carica papayaevm.TU.supercontig_12.213
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25332003 (-)A.thalianaChr3:6879617..7187521 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25384509 (+)B.rapaA06:2237156..2472723 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G505901873237818734053Chr1Subgenome_III(LF)69
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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