Basic Information
Gene Model:Bol010133
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000225
Sequence:
 | 
Gene Structure
Nucleotide Length:627 bp
Transcript Length:627 bp
Protein Length:208 aa
Strand:+
Location:C06: 24838405 : 24839031
Gene CDSs(1): 1-627 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 27 84 22.484IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 26 87 9.4e-23IPR016177DNA-binding, integrase-type
Gene3DG3DSA:3.30.730.10no description 26 87 2.6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 26 77 2.3e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 27 90 1e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 150 173 NANot foundNot found
Segsegseg 107 123 NANot foundNot found
Segsegseg 60 72 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803392e-59ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SV013e-58C0SV01_ARATH Putative uncharacterized protein At1g50640 (Fragment) OS=Arabidopsis thaliana GN=At1g50640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G506404e-59K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3569(12 genes,8 taxa):Arabidopsis thalianaAT1G50640.1
ORTHOMCL3569(12 genes,8 taxa):Arabidopsis thalianaAT3G20310.1
ORTHOMCL3569(12 genes,8 taxa):Brassica oleraceaBol004729
ORTHOMCL3569(12 genes,8 taxa):Brassica oleraceaBol010133
ORTHOMCL3569(12 genes,8 taxa):Brassica rapaBra018864
ORTHOMCL3569(12 genes,8 taxa):Brassica rapaBra035792
ORTHOMCL3569(12 genes,8 taxa):Vitis viniferaGSVIVT01037712001
ORTHOMCL3569(12 genes,8 taxa):Oryza sativaOs02t0189600-00
ORTHOMCL3569(12 genes,8 taxa):Oryza sativaOs04t0669200-01
ORTHOMCL3569(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s36610.1
ORTHOMCL3569(12 genes,8 taxa):Sorghum bicolorSb04g006080.1
ORTHOMCL3569(12 genes,8 taxa):Carica papayaevm.TU.supercontig_12.254
Tandem Duplication
ClusterGene Num.Gene List
Cluster_13652Bol010133 Bol010134 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25332003 (-)A.thalianaChr3:6879617..7187521 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25384509 (+)B.rapaA06:2237156..2472723 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G506401875714818758433Chr1Subgenome_III(LF)69
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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