Basic Information
Gene Model:Bol010127
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000225
Sequence:
 | 
Gene Structure
Nucleotide Length:1002 bp
Transcript Length:1002 bp
Protein Length:333 aa
Strand:+
Location:C06: 24768726 : 24769727
Gene CDSs(1): 1-1002 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 45 102 17.227IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 171 288 12.435IPR003340Transcriptional factor B3
superfamilySSF54171DNA-binding domain 44 105 1e-15IPR016177DNA-binding, integrase-type
Gene3DG3DSA:2.40.330.10no description 158 265 4.1e-27Not foundNot found
Gene3DG3DSA:3.30.730.10no description 44 105 7.6e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 44 93 5.7e-10IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF02362B3 170 278 4e-27IPR003340Transcriptional factor B3
HMMSmartSM00380no description 45 108 8.2e-17IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 206 219 NANot foundNot found
Segsegseg 75 87 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6P51e-123RAVL2_ARATH AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYV27e-81B9GYV2_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G506801e-123K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24175(2 genes,2 taxa):Brassica oleraceaBol010127
ORTHOMCL24175(2 genes,2 taxa):Brassica rapaBra018868
Tandem Duplication
ClusterGene Num.Gene List
Cluster_8752Bol010126 Bol010127 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25332003 (-)A.thalianaChr3:6879617..7187521 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25384509 (+)B.rapaA06:2237156..2472723 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G506801877760118778614Chr1Subgenome_III(LF)69
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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