Basic Information
Gene Model:Bol010126
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000225
Sequence:
 | 
Gene Structure
Nucleotide Length:1005 bp
Transcript Length:1005 bp
Protein Length:334 aa
Strand:+
Location:C06: 24765387 : 24766391
Gene CDSs(1): 1-1005 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 48 105 17.095IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 171 284 11.307IPR003340Transcriptional factor B3
superfamilySSF54171DNA-binding domain 47 108 3.2e-15IPR016177DNA-binding, integrase-type
Gene3DG3DSA:2.40.330.10no description 158 261 1e-24Not foundNot found
Gene3DG3DSA:3.30.730.10no description 47 108 1.3e-10IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF02362B3 170 274 5.5e-24IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 47 96 3.1e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 48 111 7.4e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 202 215 NANot foundNot found
Segsegseg 77 90 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6P51e-115RAVL2_ARATH AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYV22e-73B9GYV2_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G506801e-115K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24174(2 genes,2 taxa):Brassica oleraceaBol010126
ORTHOMCL24174(2 genes,2 taxa):Brassica rapaBra018869
Tandem Duplication
ClusterGene Num.Gene List
Cluster_8752Bol010126 Bol010127 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25332003 (-)A.thalianaChr3:6879617..7187521 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:24534286..25384509 (+)B.rapaA06:2237156..2472723 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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