Basic Information
Gene Model:Bol010087
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000226
Sequence:
 | 
Gene Structure
Nucleotide Length:2979 bp
Transcript Length:2121 bp
Protein Length:706 aa
Strand:+
Location:C09: 39962211 : 39965189
Gene CDSs(8): 1-310 | 394-555 | 691-824 | 929-1093 | 1266-1443 | 1545-1938 | 2026-2683 | 2860-2979 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 620 637 NANot foundNot found
Segsegseg 569 599 NANot foundNot found
Segsegseg 453 467 NANot foundNot found
Segsegseg 241 259 NANot foundNot found
Segsegseg 202 211 NANot foundNot found
Segsegseg 42 62 NANot foundNot found
HMMPfamPF06203CCT 648 692 1.2e-21IPR010402CCT domain
HMMPfamPF00072Response_reg 80 194 6.3e-22IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 78 193 2.2e-25IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51017CCT 648 690 15.656IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 79 197 28.104IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 79 219 6.8e-27Not foundNot found
superfamilySSF52172CheY-like 75 204 2.6e-31IPR011006CheY-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 79 198 3.2e-15Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 79 198 3.2e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q93WK50.0APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SGT01e-165B9SGT0_RICCO Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_0819890 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G028100.0K12129APRR7pseudo-response regulator 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4077(12 genes,8 taxa):Arabidopsis thalianaAT5G02810.1
ORTHOMCL4077(12 genes,8 taxa):Brassica oleraceaBol000769
ORTHOMCL4077(12 genes,8 taxa):Brassica oleraceaBol010087
ORTHOMCL4077(12 genes,8 taxa):Brassica rapaBra009565
ORTHOMCL4077(12 genes,8 taxa):Brassica rapaBra028861
ORTHOMCL4077(12 genes,8 taxa):Vitis viniferaGSVIVT01032644001
ORTHOMCL4077(12 genes,8 taxa):Oryza sativaOs03t0284100-01
ORTHOMCL4077(12 genes,8 taxa):Oryza sativaOs07t0695100-01
ORTHOMCL4077(12 genes,8 taxa):Populus trichocarpaPOPTR_0008s04610.1
ORTHOMCL4077(12 genes,8 taxa):Populus trichocarpaPOPTR_0010s22230.1
ORTHOMCL4077(12 genes,8 taxa):Sorghum bicolorSb01g038820.1
ORTHOMCL4077(12 genes,8 taxa):Carica papayaevm.TU.supercontig_1.279
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39259735..40098480 (-)A.thalianaChr5:539249..1214439 (+)109
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39273228..40098480 (+)B.rapaA10:4008088..4529865 (+)105
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G02810637897641977Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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