Basic Information
Gene Model:Bol010042
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000226
Sequence:
 | 
Gene Structure
Nucleotide Length:3055 bp
Transcript Length:2697 bp
Protein Length:898 aa
Strand:-
Location:C09: 39654482 : 39657536
Gene CDSs(2): 1-847 | 1206-3055 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.10.510.10no description 566 855 1.2e-56Not foundNot found
Segsegseg 339 357 NANot foundNot found
Segsegseg 460 473 NANot foundNot found
Segsegseg 156 174 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 514 850 43.340IPR000719Protein kinase, catalytic domain
HMMPfamPF00069Pkinase 514 850 1.6e-67IPR017442Serine/threonine-protein kinase-like domain
HMMPantherPTHR22985SERINE/THREONINE PRO 476 872 6e-217Not foundNot found
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 476 872 6e-217Not foundNot found
superfamilySSF56112Protein kinase-like 489 877 4.9e-83IPR011009Protein kinase-like domain
PatternScanPS00108PROTEIN_KINASE_ST 635 647 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00220no description 514 850 1e-89IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 514 844 7.6e-08IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q0DCT81e-148G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LZS40.0Q9LZS4_ARATH Protein kinase-like protein OS=Arabidopsis thaliana GN=F17C15_60 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G477501e-149K08286E2.7.11.-protein-serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT2G36350.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT3G52890.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT5G03640.1
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol010042
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol011727
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol025075
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol036321
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra005280
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra006955
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra009522
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra019641
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra028538
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01031372001
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01033816001
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs04t0410200-00
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs12t0480200-01
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s19740.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0006s11580.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s14910.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb06g015430.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb08g014350.1
ORTHOMCL801(22 genes,8 taxa):Carica papayaevm.TU.supercontig_47.74
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39259735..40098480 (-)A.thalianaChr5:539249..1214439 (+)109
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39273228..40098480 (+)B.rapaA10:4008088..4529865 (+)105
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G03640927915930781Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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