Basic Information
Gene Model:Bol010014
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000226
Sequence:
 | 
Gene Structure
Nucleotide Length:4518 bp
Transcript Length:4440 bp
Protein Length:1479 aa
Strand:+
Location:C09: 39402420 : 39406937
Gene CDSs(2): 1-270 | 349-4518 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF07839CaM_binding 1360 1476 2e-46IPR012417Calmodulin-binding protein, plant
HMMPfamPF07839CaM_binding 1137 1249 1.5e-50IPR012417Calmodulin-binding protein, plant
HMMPfamPF07839CaM_binding 506 613 2.4e-41IPR012417Calmodulin-binding protein, plant
HMMPfamPF07839CaM_binding 817 937 4.6e-41IPR012417Calmodulin-binding protein, plant
Segsegseg 1259 1271 NANot foundNot found
Segsegseg 639 650 NANot foundNot found
Segsegseg 308 319 NANot foundNot found
Segsegseg 439 453 NANot foundNot found
Segsegseg 474 481 NANot foundNot found
Segsegseg 280 290 NANot foundNot found
Segsegseg 294 300 NANot foundNot found
Segsegseg 83 98 NANot foundNot found
Segsegseg 252 269 NANot foundNot found
Segsegseg 12 31 NANot foundNot found
Segsegseg 56 69 NANot foundNot found
Coilcoilcoiled-coil 755 776 NANot foundNot found
Coilcoilcoiled-coil 1282 1310 NANot foundNot found
Coilcoilcoiled-coil 654 675 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9LZA80.0Q9LZA8_ARATH Putative uncharacterized protein F8F6_230 OS=Arabidopsis thaliana GN=F8F6_230 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8354(9 genes,6 taxa):Arabidopsis thalianaAT5G04020.1
ORTHOMCL8354(9 genes,6 taxa):Brassica oleraceaBol010014
ORTHOMCL8354(9 genes,6 taxa):Brassica rapaBra009493
ORTHOMCL8354(9 genes,6 taxa):Vitis viniferaGSVIVT01033565001
ORTHOMCL8354(9 genes,6 taxa):Populus trichocarpaPOPTR_0006s04250.1
ORTHOMCL8354(9 genes,6 taxa):Populus trichocarpaPOPTR_0016s04060.1
ORTHOMCL8354(9 genes,6 taxa):Populus trichocarpaPOPTR_0016s04060.2
ORTHOMCL8354(9 genes,6 taxa):Carica papayaevm.TU.supercontig_5.180
ORTHOMCL8354(9 genes,6 taxa):Carica papayaevm.TU.supercontig_77.28
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39259735..40098480 (-)A.thalianaChr5:539249..1214439 (+)109
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:39273228..40098480 (+)B.rapaA10:4008088..4529865 (+)105
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0402010816111086546Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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