Basic Information
Gene Model:Bol009932
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C09
Scaffold:Scaffold000228
Sequence:
 | 
Gene Structure
Nucleotide Length:1700 bp
Transcript Length:735 bp
Protein Length:244 aa
Strand:+
Location:C09: 24762272 : 24763971
Gene CDSs(7): 1-228 | 544-666 | 738-831 | 911-993 | 1069-1158 | 1271-1318 | 1632-1700 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00383TYR_PHOSPHATASE_1 159 169 NAIPR016130Protein-tyrosine phosphatase, active site
superfamilySSF52799(Phosphotyrosine pro 68 214 4.8e-35Not foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 138 206 14.683IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 73 203 18.203IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMSmartSM00195no description 73 214 4.7e-05IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 139 214 3.3e-15IPR000340Dual specificity phosphatase, catalytic domain
Segsegseg 19 39 NANot foundNot found
HMMPantherPTHR10159DUAL SPECIFICITY PRO 64 219 3.1e-87Not foundNot found
HMMPantherPTHR10159:SF5PTEN-RELATED PHOSPHA 64 219 3.1e-87Not foundNot found
Gene3DG3DSA:3.90.190.10no description 67 215 1.6e-29Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
P0C0895e-24PTPM1_RAT Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q6NKR21e-103Q6NKR2_ARATH At5g56610 OS=Arabidopsis thaliana GN=At5g56610 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4099553e-70K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12120(7 genes,7 taxa):Arabidopsis thalianaAT5G56610.1
ORTHOMCL12120(7 genes,7 taxa):Brassica oleraceaBol009932
ORTHOMCL12120(7 genes,7 taxa):Brassica rapaBra002803
ORTHOMCL12120(7 genes,7 taxa):Vitis viniferaGSVIVT01015275001
ORTHOMCL12120(7 genes,7 taxa):Oryza sativaOs01t0739200-01
ORTHOMCL12120(7 genes,7 taxa):Sorghum bicolorSb03g034070.1
ORTHOMCL12120(7 genes,7 taxa):Carica papayaevm.TU.supercontig_78.37
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:23931701..24905175 (+)A.thalianaChr5:22719191..22939036 (+)37
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:23931701..24905175 (+)B.rapaA10:10089517..10411637 (-)38
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G566102291671022918338Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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