Basic Information
Gene Model:Bol009849
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000229
Sequence:
 | 
Gene Structure
Nucleotide Length:1276 bp
Transcript Length:675 bp
Protein Length:224 aa
Strand:+
Location:C08: 37308479 : 37309754
Gene CDSs(5): 1-39 | 257-496 | 649-816 | 933-1046 | 1163-1276 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05008V-SNARE 51 202 3.7e-48IPR007705Vesicle transport v-SNARE
Coilcoilcoiled-coil 44 65 NANot foundNot found
HMMPantherPTHR21094GOS-28 SNARE- RELATE 1 223 1.4e-76Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9LMP71e-120GOS11_ARATH Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SMU41e-108B9SMU4_RICCO Golgi snare 11 protein, putative OS=Ricinus communis GN=RCOM_0470970 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G158801e-120K08495GOSR1, GOS1golgi SNAP receptor complex member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3460(12 genes,8 taxa):Arabidopsis thalianaAT1G15880.1
ORTHOMCL3460(12 genes,8 taxa):Brassica oleraceaBol009849
ORTHOMCL3460(12 genes,8 taxa):Brassica oleraceaBol038177
ORTHOMCL3460(12 genes,8 taxa):Brassica rapaBra026095
ORTHOMCL3460(12 genes,8 taxa):Brassica rapaBra026741
ORTHOMCL3460(12 genes,8 taxa):Vitis viniferaGSVIVT01035904001
ORTHOMCL3460(12 genes,8 taxa):Oryza sativaOs08t0440000-01
ORTHOMCL3460(12 genes,8 taxa):Oryza sativaOs09t0416700-01
ORTHOMCL3460(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s14820.1
ORTHOMCL3460(12 genes,8 taxa):Populus trichocarpaPOPTR_0003s17920.1
ORTHOMCL3460(12 genes,8 taxa):Sorghum bicolorSb02g024720.1
ORTHOMCL3460(12 genes,8 taxa):Carica papayaevm.TU.supercontig_10.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:37286401..37485164 (-)A.thalianaChr1:30151003..30403676 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1588054585355460333Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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