Basic Information
Gene Model:Bol009809
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000229
Sequence:
 | 
Gene Structure
Nucleotide Length:4089 bp
Transcript Length:1590 bp
Protein Length:529 aa
Strand:-
Location:C08: 37134322 : 37138410
Gene CDSs(9): 1-57 | 146-334 | 1550-1960 | 2560-2884 | 2969-3014 | 3261-3430 | 3531-3652 | 3741-3832 | 3912-4089 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 160 167 NANot foundNot found
Segsegseg 321 335 NANot foundNot found
Segsegseg 350 372 NANot foundNot found
Segsegseg 515 529 NANot foundNot found
Coilcoilcoiled-coil 312 336 NANot foundNot found
Coilcoilcoiled-coil 344 367 NANot foundNot found
HMMPfamPF00582Usp 14 155 2.7e-11IPR006016UspA
HMMPfamPF07714Pkinase_Tyr 405 457 2.4e-07IPR001245Tyrosine-protein kinase, catalytic domain
Gene3DG3DSA:3.30.200.20no description 386 448 7.3e-07Not foundNot found
Gene3DG3DSA:3.40.50.620no description 18 154 2.8e-06IPR014729Rossmann-like alpha/beta/alpha sandwich fold
superfamilySSF56112Protein kinase-like 390 448 4e-10IPR011009Protein kinase-like domain
superfamilySSF52402Adenine nucleotide a 16 154 3.7e-10Not foundNot found
HMMPantherPTHR23258:SF203SERINE THREONINE KIN 195 529 8.7e-53Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 195 529 8.7e-53Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0006950 Biological Process response to stress
Swiss-Prot
Best HitE_value Description
Q9LU471e-17PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9FWR00.0Q9FWR0_ARATH F17F16.3 protein OS=Arabidopsis thaliana GN=F17F16.3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT1G16760.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT1G78940.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT2G07020.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT2G24370.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT3G20200.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT4G31230.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G12000.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G26150.1
ORTHOMCL94(63 genes,8 taxa):Arabidopsis thalianaAT5G35380.1
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol003574
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol004745
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol009809
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol027010
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol029282
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol033715
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol038252
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol040297
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol040481
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol041930
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol042556
ORTHOMCL94(63 genes,8 taxa):Brassica oleraceaBol045777
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra007857
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra008387
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra008921
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra013166
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra016631
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra020547
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra023358
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra024016
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra026027
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra026707
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra032100
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035078
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035539
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra035805
ORTHOMCL94(63 genes,8 taxa):Brassica rapaBra040779
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01016815001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01029530001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01032261001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01035414001
ORTHOMCL94(63 genes,8 taxa):Vitis viniferaGSVIVT01035572001
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs01t0581400-01
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs02t0218400-01
ORTHOMCL94(63 genes,8 taxa):Oryza sativaOs02t0787200-01
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0001s20560.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s07810.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s24180.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s29380.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0007s15230.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0014s00490.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0014s01190.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0018s04050.1
ORTHOMCL94(63 genes,8 taxa):Populus trichocarpaPOPTR_0018s07600.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb03g026030.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb04g007620.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb04g035360.1
ORTHOMCL94(63 genes,8 taxa):Sorghum bicolorSb10g006130.1
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_115.24
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_139.31
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_148.8
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_176.23
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_66.100
ORTHOMCL94(63 genes,8 taxa):Carica papayaevm.TU.supercontig_7.150
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1676057342345737307Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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