Basic Information
Gene Model:Bol009793
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000229
Sequence:
 | 
Gene Structure
Nucleotide Length:1758 bp
Transcript Length:1758 bp
Protein Length:585 aa
Strand:-
Location:C08: 37019546 : 37021303
Gene CDSs(1): 1-1758 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11785AMINO ACID TRANSPORT 71 582 1.6e-186IPR002293Amino acid/polyamine transporter I
HMMPantherPTHR11785:SF53CATIONIC AMINO ACID 71 582 1.6e-186IPR015606Cationic amino acid transporter
Segsegseg 460 470 NANot foundNot found
Segsegseg 207 220 NANot foundNot found
Segsegseg 240 255 NANot foundNot found
Segsegseg 89 100 NANot foundNot found
HMMPfamPF00324AA_permease 233 447 1.4e-06IPR004841Amino acid permease-associated region
HMMPfamPF00324AA_permease 84 149 4.5e-06IPR004841Amino acid permease-associated region
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0006865 Biological Process amino acid transport
GO:0015171 Molecular Function amino acid transmembrane transporter activity
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q797A77e-59YFNA_BACSU Uncharacterized amino acid permease yfnA OS=Bacillus subtilis GN=yfnA PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9SHH00.0Q9SHH0_ARATH Very similar to amino acid transporter OS=Arabidopsis thaliana GN=At1g17120 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_08g0213801e-172K03294TC.APAbasic amino acid/polyamine antiporter, APA family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL342(32 genes,8 taxa):Arabidopsis thalianaAT1G17120.1
ORTHOMCL342(32 genes,8 taxa):Arabidopsis thalianaAT2G34960.1
ORTHOMCL342(32 genes,8 taxa):Arabidopsis thalianaAT4G21120.1
ORTHOMCL342(32 genes,8 taxa):Brassica oleraceaBol009793
ORTHOMCL342(32 genes,8 taxa):Brassica oleraceaBol011954
ORTHOMCL342(32 genes,8 taxa):Brassica oleraceaBol024315
ORTHOMCL342(32 genes,8 taxa):Brassica oleraceaBol037831
ORTHOMCL342(32 genes,8 taxa):Brassica rapaBra020887
ORTHOMCL342(32 genes,8 taxa):Brassica rapaBra021941
ORTHOMCL342(32 genes,8 taxa):Brassica rapaBra026688
ORTHOMCL342(32 genes,8 taxa):Brassica rapaBra038785
ORTHOMCL342(32 genes,8 taxa):Vitis viniferaGSVIVT01000682001
ORTHOMCL342(32 genes,8 taxa):Vitis viniferaGSVIVT01011963001
ORTHOMCL342(32 genes,8 taxa):Vitis viniferaGSVIVT01012155001
ORTHOMCL342(32 genes,8 taxa):Vitis viniferaGSVIVT01021609001
ORTHOMCL342(32 genes,8 taxa):Oryza sativaOs01t0209800-01
ORTHOMCL342(32 genes,8 taxa):Oryza sativaOs01t0209800-02
ORTHOMCL342(32 genes,8 taxa):Oryza sativaOs06t0539400-01
ORTHOMCL342(32 genes,8 taxa):Oryza sativaOs12t0613100-00
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0001s12180.1
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0001s38770.1
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0003s15340.1
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0012s14160.1
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0013s03140.1
ORTHOMCL342(32 genes,8 taxa):Populus trichocarpaPOPTR_0015s14180.1
ORTHOMCL342(32 genes,8 taxa):Sorghum bicolorSb01g013690.1
ORTHOMCL342(32 genes,8 taxa):Sorghum bicolorSb03g002130.1
ORTHOMCL342(32 genes,8 taxa):Sorghum bicolorSb08g021380.1
ORTHOMCL342(32 genes,8 taxa):Sorghum bicolorSb10g021160.1
ORTHOMCL342(32 genes,8 taxa):Carica papayaevm.TU.supercontig_17.71
ORTHOMCL342(32 genes,8 taxa):Carica papayaevm.TU.supercontig_30.82
ORTHOMCL342(32 genes,8 taxa):Carica papayaevm.TU.supercontig_77.92
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1712058519535853955Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo