Basic Information
Gene Model:Bol009767
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000229
Sequence:
 | 
Gene Structure
Nucleotide Length:1498 bp
Transcript Length:822 bp
Protein Length:273 aa
Strand:+
Location:C08: 36854441 : 36855938
Gene CDSs(6): 1-150 | 362-516 | 642-726 | 848-955 | 1061-1352 | 1467-1498 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 246 263 NANot foundNot found
Segsegseg 52 78 NANot foundNot found
Coilcoilcoiled-coil 223 251 NANot foundNot found
HMMPfamPF00538Linker_histone 100 167 5.4e-05IPR005818Histone H1/H5
HMMPantherPTHR11467HISTONE H1/H5 101 160 0.00033Not foundNot found
HMMPfamPF00249Myb_DNA-binding 5 31 7.5e-06IPR014778Myb, DNA-binding
HMMSmartSM00526no description 97 163 2.2e-17IPR005818Histone H1/H5
Gene3DG3DSA:1.10.10.60no description 3 59 1.1e-08IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.10no description 94 174 1.1e-05IPR011991Winged helix repressor DNA-binding
superfamilySSF46785"Winged helix" DNA-b 95 188 2e-15Not foundNot found
ProfileScanPS51294HTH_MYB 1 53 9.754IPR017930Myb-type HTH DNA-binding domain
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8GWZ56e-79Q8GWZ5_ARATH Putative myb-related DNA-binding protein OS=Arabidopsis thaliana GN=At1g17520/F1L3_25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G175202e-80K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24137(2 genes,2 taxa):Brassica oleraceaBol009767
ORTHOMCL24137(2 genes,2 taxa):Brassica rapaBra030992
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36770203..36957712 (-)A.thalianaChr1:27217477..27541944 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:35446303..36957712 (+)B.rapaA09:3964911..5296599 (-)181
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1752060246366027385Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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