Basic Information
Gene Model:Bol009713
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000230
Sequence:
 | 
Gene Structure
Nucleotide Length:1915 bp
Transcript Length:1152 bp
Protein Length:383 aa
Strand:+
Location:C05: 17380559 : 17382473
Gene CDSs(8): 1-204 | 297-383 | 465-524 | 598-675 | 743-806 | 1102-1373 | 1450-1683 | 1763-1915 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 93 151 0.0011IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 116 144 NANot foundNot found
HMMPfamPF00170bZIP_1 93 125 1.9e-08IPR011616bZIP transcription factor, bZIP-1
ProfileScanPS50217BZIP 95 137 9.347IPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 58 70 NANot foundNot found
Segsegseg 86 96 NANot foundNot found
Segsegseg 275 288 NANot foundNot found
Segsegseg 39 52 NANot foundNot found
Segsegseg 3 8 NANot foundNot found
PatternScanPS00036BZIP_BASIC 100 115 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q392340.0TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7Y1S10.0A7Y1S1_BRAJU BZIP transcription factor OS=Brassica juncea GN=CdR15 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G220700.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11194(7 genes,6 taxa):Arabidopsis thalianaAT1G22070.1
ORTHOMCL11194(7 genes,6 taxa):Brassica oleraceaBol009713
ORTHOMCL11194(7 genes,6 taxa):Brassica rapaBra031364
ORTHOMCL11194(7 genes,6 taxa):Vitis viniferaGSVIVT01008960001
ORTHOMCL11194(7 genes,6 taxa):Populus trichocarpaPOPTR_0002s09130.1
ORTHOMCL11194(7 genes,6 taxa):Populus trichocarpaPOPTR_0005s16400.1
ORTHOMCL11194(7 genes,6 taxa):Carica papayaevm.TU.supercontig_49.110
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:16419418..17459546 (+)A.thalianaChr1:28822186..29339755 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..17408196 (+)B.rapaA08:1888770..2871761 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2207077893487792114Chr1Subgenome_III(LF)147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo