Basic Information
Gene Model:Bol009696
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000230
Sequence:
 | 
Gene Structure
Nucleotide Length:708 bp
Transcript Length:708 bp
Protein Length:235 aa
Strand:+
Location:C05: 17195414 : 17196121
Gene CDSs(1): 1-708 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 43 100 22.076IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 43 106 7.7e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 42 103 1.3e-21IPR016177DNA-binding, integrase-type
Segsegseg 11 45 NANot foundNot found
Segsegseg 133 166 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 42 103 2.3e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 42 93 5.4e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SFE47e-77ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PLA69e-31A9PLA6_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=RAP2L16 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G067467e-21K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9036(8 genes,7 taxa):Arabidopsis thalianaAT1G21910.1
ORTHOMCL9036(8 genes,7 taxa):Brassica oleraceaBol009696
ORTHOMCL9036(8 genes,7 taxa):Brassica rapaBra036022
ORTHOMCL9036(8 genes,7 taxa):Oryza sativaOs02t0767800-00
ORTHOMCL9036(8 genes,7 taxa):Populus trichocarpaPOPTR_0002s08610.1
ORTHOMCL9036(8 genes,7 taxa):Populus trichocarpaPOPTR_0005s15830.1
ORTHOMCL9036(8 genes,7 taxa):Sorghum bicolorSb04g034290.1
ORTHOMCL9036(8 genes,7 taxa):Carica papayaevm.TU.supercontig_36.40
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:16419418..17459546 (+)A.thalianaChr1:28822186..29339755 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..17408196 (+)B.rapaA08:1888770..2871761 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2191076965367697699Chr1Subgenome_III(LF)147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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