Basic Information
Gene Model:Bol009457
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000233
Sequence:
 | 
Gene Structure
Nucleotide Length:1868 bp
Transcript Length:741 bp
Protein Length:246 aa
Strand:+
Location:Scaffold000233: 610827 : 612694
Gene CDSs(5): 1-417 | 876-1010 | 1118-1183 | 1565-1633 | 1815-1868 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 170 238 3.7e-13IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 180 230 3e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 184 196 NANot foundNot found
Segsegseg 5 23 NANot foundNot found
HMMPfamPF00010HLH 177 225 9.1e-09IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 214 242 NANot foundNot found
Gene3DG3DSA:4.10.280.10no description 170 234 4e-06IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 169 225 12.582IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C8P81e-110BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9MWC92e-72B9MWC9_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826895 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095308e-08K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9119(8 genes,6 taxa):Arabidopsis thalianaAT1G35460.1
ORTHOMCL9119(8 genes,6 taxa):Arabidopsis thalianaAT4G09180.1
ORTHOMCL9119(8 genes,6 taxa):Brassica oleraceaBol009457
ORTHOMCL9119(8 genes,6 taxa):Brassica rapaBra036760
ORTHOMCL9119(8 genes,6 taxa):Vitis viniferaGSVIVT01026056001
ORTHOMCL9119(8 genes,6 taxa):Populus trichocarpaPOPTR_0013s11200.1
ORTHOMCL9119(8 genes,6 taxa):Populus trichocarpaPOPTR_0019s10900.1
ORTHOMCL9119(8 genes,6 taxa):Carica papayaevm.TU.supercontig_507.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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