Basic Information
Gene Model:Bol009344
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000234
Sequence:
 | 
Gene Structure
Nucleotide Length:2287 bp
Transcript Length:2205 bp
Protein Length:734 aa
Strand:-
Location:C01: 7035525 : 7037811
Gene CDSs(2): 1-1930 | 2013-2287 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 704 726 NANot foundNot found
Segsegseg 581 599 NANot foundNot found
Segsegseg 647 666 NANot foundNot found
Segsegseg 672 690 NANot foundNot found
HMMPfamPF01150GDA1_CD39 139 577 1.8e-24IPR000407Nucleoside phosphatase GDA1/CD39
HMMPantherPTHR11782:SF3ADENOSINE DIPHOSPHAT 146 638 0Not foundNot found
HMMPantherPTHR11782ADENOSINE/GUANOSINE 146 638 0IPR000407Nucleoside phosphatase GDA1/CD39
Gene Ontology
GO TermGO TypeDescription
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
Q8K0L22e-34ENTP8_MOUSE Ectonucleoside triphosphate diphosphohydrolase 8 OS=Mus musculus GN=Entpd8 PE=1 SV=3
TrEMBL
Best HitE_value Description
O496760.0O49676_ARATH Putative uncharacterized protein AT4g19180 OS=Arabidopsis thaliana GN=T18B16.150 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G142305e-39K01510ENTPD1_3_8apyrase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6488(10 genes,8 taxa):Arabidopsis thalianaAT4G19180.1
ORTHOMCL6488(10 genes,8 taxa):Brassica oleraceaBol009344
ORTHOMCL6488(10 genes,8 taxa):Brassica oleraceaBol024387
ORTHOMCL6488(10 genes,8 taxa):Brassica rapaBra012554
ORTHOMCL6488(10 genes,8 taxa):Brassica rapaBra013379
ORTHOMCL6488(10 genes,8 taxa):Vitis viniferaGSVIVT01032759001
ORTHOMCL6488(10 genes,8 taxa):Oryza sativaOs10t0350500-01
ORTHOMCL6488(10 genes,8 taxa):Populus trichocarpaPOPTR_0004s24490.1
ORTHOMCL6488(10 genes,8 taxa):Sorghum bicolorSb09g022850.1
ORTHOMCL6488(10 genes,8 taxa):Carica papayaevm.TU.supercontig_90.23
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:6388139..7144563 (-)A.thalianaChr5:18363406..18726200 (+)23
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:5858746..7789285 (+)B.rapaA08:10118463..11165023 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G191801048532510488413Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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