Basic Information
Gene Model:Bol009343
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000234
Sequence:
 | 
Gene Structure
Nucleotide Length:3675 bp
Transcript Length:1491 bp
Protein Length:496 aa
Strand:-
Location:C01: 7037862 : 7041536
Gene CDSs(9): 1-218 | 1040-1102 | 1208-1324 | 1394-1679 | 1768-1923 | 2002-2153 | 2259-2420 | 3203-3470 | 3607-3675 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 82 97 NANot foundNot found
HMMPfamPF00892DUF6 223 347 1.2e-12IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 58 164 1.4e-08IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 55 166 1.5e-08Not foundNot found
superfamilySSF103481Multidrug resistance 250 354 4.7e-12Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1634e-585NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8W4R90.0Q8W4R9_ARATH AT4g19180/T18B16_150 OS=Arabidopsis thaliana GN=At4g19185/At4g19180 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10206(8 genes,6 taxa):Arabidopsis thalianaAT4G19185.1
ORTHOMCL10206(8 genes,6 taxa):Brassica oleraceaBol009343
ORTHOMCL10206(8 genes,6 taxa):Brassica oleraceaBol029877
ORTHOMCL10206(8 genes,6 taxa):Brassica rapaBra013380
ORTHOMCL10206(8 genes,6 taxa):Brassica rapaBra020969
ORTHOMCL10206(8 genes,6 taxa):Populus trichocarpaPOPTR_0004s24510.1
ORTHOMCL10206(8 genes,6 taxa):Sorghum bicolorSb04g030650.1
ORTHOMCL10206(8 genes,6 taxa):Carica papayaevm.TU.supercontig_90.26
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:6388139..7144563 (-)A.thalianaChr5:18363406..18726200 (+)23
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:5858746..7789285 (+)B.rapaA08:10118463..11165023 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G191851048904210491671Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo