Basic Information
Gene Model:Bol009232
Gene Family:14-3-3 Gene Family
Chromosome:C03
Scaffold:Scaffold000236
Sequence:
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Gene Structure
Nucleotide Length:1632 bp
Transcript Length:747 bp
Protein Length:248 aa
Strand:-
Location:C03: 42740319 : 42741950
Gene CDSs(4): 1-21 | 178-294 | 859-981 | 1147-1632 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR1886014-3-3 2 248 4e-185IPR00030814-3-3 protein
PatternScanPS007971433_2 220 239 NAIPR00030814-3-3 protein
PatternScanPS007961433_1 48 58 NAIPR00030814-3-3 protein
HMMPfamPF0024414-3-3 7 245 1e-141IPR00030814-3-3 protein
Coilcoilcoiled-coil 13 34 NANot foundNot found
Gene3DG3DSA:1.20.190.20no description 5 248 1e-103IPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 5 248 1.8e-165IPR00030814-3-3 protein
HMMSmartSM00101no description 7 247 1.6e-180IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 4 240 1.5e-102IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
P483481e-13914338_ARATH 14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0KJL11e-126C0KJL1_BRANA 1433-4 OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:5426911e-112K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8728(9 genes,5 taxa):Arabidopsis thalianaAT5G65430.1
ORTHOMCL8728(9 genes,5 taxa):Brassica oleraceaBol009232
ORTHOMCL8728(9 genes,5 taxa):Brassica oleraceaBol019043
ORTHOMCL8728(9 genes,5 taxa):Brassica rapaBra024384
ORTHOMCL8728(9 genes,5 taxa):Brassica rapaBra037818
ORTHOMCL8728(9 genes,5 taxa):Populus trichocarpaPOPTR_0002s10400.1
ORTHOMCL8728(9 genes,5 taxa):Populus trichocarpaPOPTR_0005s17740.1
ORTHOMCL8728(9 genes,5 taxa):Carica papayaevm.TU.supercontig_309.6
ORTHOMCL8728(9 genes,5 taxa):Carica papayaevm.TU.supercontig_55.37
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:42496122..43054848 (+)A.thalianaChr5:26057623..26228449 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:41746935..43054848 (+)B.rapaA06:16433459..16873496 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G654302614820126150342Chr5Subgenome_III(LF)31
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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