Basic Information
Gene Model:Bol009129
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000238
Sequence:
 | 
Gene Structure
Nucleotide Length:2379 bp
Transcript Length:1038 bp
Protein Length:345 aa
Strand:+
Location:C04: 8243429 : 8245807
Gene CDSs(2): 1-574 | 1916-2379 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.1050.30no description 41 248 1.7e-49Not foundNot found
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 8 244 1.2e-129Not foundNot found
HMMPantherPTHR19957SYNTAXIN 8 244 1.2e-129Not foundNot found
PatternScanPS00914SYNTAXIN 220 259 NAIPR006012Syntaxin/epimorphin, conserved site
superfamilySSF47661t-snare proteins 41 249 1.1e-49IPR010989t-SNARE
HMMPfamPF05739SNARE 219 281 2e-23IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 43 150 1.4e-26IPR006011Syntaxin, N-terminal
Segsegseg 321 345 NANot foundNot found
Segsegseg 311 319 NANot foundNot found
Segsegseg 14 23 NANot foundNot found
Segsegseg 291 303 NANot foundNot found
HMMSmartSM00503no description 39 165 5.7e-34IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 209 276 1.5e-17IPR000727Target SNARE coiled-coil region
ProfileScanPS50192T_SNARE 214 276 18.119IPR000727Target SNARE coiled-coil region
Coilcoilcoiled-coil 139 160 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SVC21e-141SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SDJ91e-112B9SDJ9_RICCO Syntaxin, putative OS=Ricinus communis GN=RCOM_0420140 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G524001e-140K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18619(3 genes,3 taxa):Arabidopsis thalianaAT3G52400.1
ORTHOMCL18619(3 genes,3 taxa):Brassica oleraceaBol009129
ORTHOMCL18619(3 genes,3 taxa):Brassica rapaBra033436
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:7367852..8593569 (-)A.thalianaChr3:19225360..19734695 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:7093486..8593569 (+)B.rapaA09:10088049..10785356 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G524001942563419427141Chr3Subgenome_I132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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