| Basic Information |
| Gene Model: | Bol009096 |
| Gene Family: | Antiporter Super Family |
| Chromosome: | C01 |
| Scaffold: | Scaffold000239 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 2628 bp |
| Transcript Length: | 2454 bp |
| Protein Length: | 817 aa |
| Strand: | + |
| Location: | C01: 24006018 : 24008645 |
| Gene CDSs(3): | 1-264 | 348-1406 | 1498-2628 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMPfam | PF00999 | Na_H_Exchanger |
131 |
468 |
1.9e-14 | IPR006153 | Cation/H+ exchanger | | Seg | seg | seg |
384 |
399 |
NA | Not found | Not found | | Seg | seg | seg |
778 |
790 |
NA | Not found | Not found | | Seg | seg | seg |
811 |
815 |
NA | Not found | Not found | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0006812 |
Biological Process |
cation transport | | GO:0015299 |
Molecular Function |
solute:hydrogen antiporter activity | | GO:0016021 |
Cellular Component |
integral to membrane | | GO:0055085 |
Biological Process |
transmembrane transport |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | O22920 | 3e-84 | CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | Q9FYC1 | 0.0 | Q9FYC1_ARATH Putative uncharacterized protein F28D10_90 OS=Arabidopsis thaliana GN=F28D10_90 PE=2 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | Note: this gene was not detected its best hit in KEGG database. |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL3896(12 genes,5 taxa): | Arabidopsis thaliana | AT3G44900.1 | | ORTHOMCL3896(12 genes,5 taxa): | Arabidopsis thaliana | AT5G22900.1 | | ORTHOMCL3896(12 genes,5 taxa): | Brassica oleracea | Bol009096 | | ORTHOMCL3896(12 genes,5 taxa): | Brassica oleracea | Bol036002 | | ORTHOMCL3896(12 genes,5 taxa): | Brassica rapa | Bra020225 | | ORTHOMCL3896(12 genes,5 taxa): | Brassica rapa | Bra037610 | | ORTHOMCL3896(12 genes,5 taxa): | Populus trichocarpa | POPTR_0006s19050.1 | | ORTHOMCL3896(12 genes,5 taxa): | Populus trichocarpa | POPTR_0018s10740.1 | | ORTHOMCL3896(12 genes,5 taxa): | Carica papaya | evm.TU.supercontig_1.6 | | ORTHOMCL3896(12 genes,5 taxa): | Carica papaya | evm.TU.supercontig_381.1 | | ORTHOMCL3896(12 genes,5 taxa): | Carica papaya | evm.TU.supercontig_381.2 | | ORTHOMCL3896(12 genes,5 taxa): | Carica papaya | evm.TU.supercontig_75.14 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | | M | AT3G44900 | 16388724 | 16391360 | Chr3 | Subgenome_I | 8 | |
|
