Basic Information
Gene Model:Bol009096
Gene Family:Antiporter Super Family
Chromosome:C01
Scaffold:Scaffold000239
Sequence:
 | 
Gene Structure
Nucleotide Length:2628 bp
Transcript Length:2454 bp
Protein Length:817 aa
Strand:+
Location:C01: 24006018 : 24008645
Gene CDSs(3): 1-264 | 348-1406 | 1498-2628 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00999Na_H_Exchanger 131 468 1.9e-14IPR006153Cation/H+ exchanger
Segsegseg 384 399 NANot foundNot found
Segsegseg 778 790 NANot foundNot found
Segsegseg 811 815 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O229203e-84CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FYC10.0Q9FYC1_ARATH Putative uncharacterized protein F28D10_90 OS=Arabidopsis thaliana GN=F28D10_90 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3896(12 genes,5 taxa):Arabidopsis thalianaAT3G44900.1
ORTHOMCL3896(12 genes,5 taxa):Arabidopsis thalianaAT5G22900.1
ORTHOMCL3896(12 genes,5 taxa):Brassica oleraceaBol009096
ORTHOMCL3896(12 genes,5 taxa):Brassica oleraceaBol036002
ORTHOMCL3896(12 genes,5 taxa):Brassica rapaBra020225
ORTHOMCL3896(12 genes,5 taxa):Brassica rapaBra037610
ORTHOMCL3896(12 genes,5 taxa):Populus trichocarpaPOPTR_0006s19050.1
ORTHOMCL3896(12 genes,5 taxa):Populus trichocarpaPOPTR_0018s10740.1
ORTHOMCL3896(12 genes,5 taxa):Carica papayaevm.TU.supercontig_1.6
ORTHOMCL3896(12 genes,5 taxa):Carica papayaevm.TU.supercontig_381.1
ORTHOMCL3896(12 genes,5 taxa):Carica papayaevm.TU.supercontig_381.2
ORTHOMCL3896(12 genes,5 taxa):Carica papayaevm.TU.supercontig_75.14
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:23308538..25154223 (+)B.rapaA08:11805231..12406486 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G449001638872416391360Chr3Subgenome_I8
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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