Basic Information
Gene Model:Bol008980
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000240
Sequence:
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Gene Structure
Nucleotide Length:2342 bp
Transcript Length:2115 bp
Protein Length:704 aa
Strand:-
Location:Scaffold000240: 145239 : 147580
Gene CDSs(4): 1-66 | 145-1806 | 1880-1987 | 2064-2342 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23315BETA CATENIN-RELATED 427 689 8.3e-13Not foundNot found
ProfileScanPS50176ARM_REPEAT 582 623 9.642IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 541 583 8.732IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 458 500 10.972IPR000225Armadillo
superfamilySSF57850RING/U-box 200 286 4.6e-13Not foundNot found
superfamilySSF48371ARM repeat 257 693 8.9e-60IPR016024Armadillo-type fold
HMMPfamPF00514Arm 611 651 0.012IPR000225Armadillo
HMMPfamPF00514Arm 571 610 0.013IPR000225Armadillo
HMMPfamPF00514Arm 488 528 6.1e-08IPR000225Armadillo
HMMPfamPF04564U-box 216 290 1.1e-46IPR003613U box domain
HMMPfamPF00514Arm 447 487 3.6e-09IPR000225Armadillo
Gene3DG3DSA:1.25.10.10no description 406 700 6e-48IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 213 290 3.4e-26Not foundNot found
Segsegseg 368 385 NANot foundNot found
Segsegseg 115 126 NANot foundNot found
Segsegseg 316 331 NANot foundNot found
HMMSmartSM00185no description 571 610 0.024IPR000225Armadillo
HMMSmartSM00185no description 611 651 33IPR000225Armadillo
HMMSmartSM00185no description 488 528 0.00061IPR000225Armadillo
HMMSmartSM00185no description 529 570 7.7IPR000225Armadillo
HMMSmartSM00504no description 220 283 3.2e-30IPR003613U box domain
HMMSmartSM00185no description 447 487 0.62IPR000225Armadillo
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GWV50.0PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
TrEMBL
Best HitE_value Description
A8MQL60.0A8MQL6_ARATH Uncharacterized protein At3g54790.2 OS=Arabidopsis thaliana GN=At3g54790 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pcs:Pc21g033003e-16K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8034(9 genes,6 taxa):Arabidopsis thalianaAT3G54790.1
ORTHOMCL8034(9 genes,6 taxa):Brassica oleraceaBol008980
ORTHOMCL8034(9 genes,6 taxa):Brassica oleraceaBol044176
ORTHOMCL8034(9 genes,6 taxa):Brassica rapaBra007097
ORTHOMCL8034(9 genes,6 taxa):Brassica rapaBra014787
ORTHOMCL8034(9 genes,6 taxa):Vitis viniferaGSVIVT01028347001
ORTHOMCL8034(9 genes,6 taxa):Populus trichocarpaPOPTR_0002s03870.1
ORTHOMCL8034(9 genes,6 taxa):Populus trichocarpaPOPTR_0005s24700.1
ORTHOMCL8034(9 genes,6 taxa):Carica papayaevm.TU.supercontig_4420.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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