Basic Information
Gene Model:Bol008965
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000240
Sequence:
 | 
Gene Structure
Nucleotide Length:1978 bp
Transcript Length:1137 bp
Protein Length:378 aa
Strand:-
Location:Scaffold000240: 19936 : 21913
Gene CDSs(6): 1-234 | 325-450 | 561-636 | 920-1124 | 1400-1481 | 1565-1978 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 228 282 10.737IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene3DG3DSA:1.20.5.170no description 230 284 0.00046Not foundNot found
HMMPfamPF00170bZIP_1 226 289 1.3e-13IPR011616bZIP transcription factor, bZIP-1
Segsegseg 237 248 NANot foundNot found
Segsegseg 16 24 NANot foundNot found
Segsegseg 105 117 NANot foundNot found
Segsegseg 131 142 NANot foundNot found
Segsegseg 202 217 NANot foundNot found
Coilcoilcoiled-coil 288 309 NANot foundNot found
Coilcoilcoiled-coil 239 267 NANot foundNot found
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 225 272 0.00015Not foundNot found
HMMPantherPTHR22952:SF11CAMP-RESPONSE ELEMEN 225 272 0.00015Not foundNot found
HMMSmartSM00338no description 226 290 7.7e-17IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 233 248 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q990902e-46CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q712N91e-131Q712N9_ARATH BZIP protein BZ2 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540831e-09K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12934(6 genes,5 taxa):Arabidopsis thalianaAT3G54620.1
ORTHOMCL12934(6 genes,5 taxa):Brassica oleraceaBol008965
ORTHOMCL12934(6 genes,5 taxa):Brassica rapaBra007083
ORTHOMCL12934(6 genes,5 taxa):Populus trichocarpaPOPTR_0002s04660.1
ORTHOMCL12934(6 genes,5 taxa):Populus trichocarpaPOPTR_0005s23900.1
ORTHOMCL12934(6 genes,5 taxa):Carica papayaevm.TU.supercontig_52.96
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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