Basic Information
Gene Model:Bol008933
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000241
Sequence:
 | 
Gene Structure
Nucleotide Length:1158 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:+
Location:C02: 7359114 : 7360271
Gene CDSs(4): 1-264 | 342-887 | 994-1064 | 1149-1158 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 13 112 9e-12IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 4 109 2.7e-17Not foundNot found
ProfileScanPS50863B3 12 108 11.730IPR003340Transcriptional factor B3
Segsegseg 172 185 NANot foundNot found
Segsegseg 128 159 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LVG11e-70Y5013_ARATH B3 domain-containing protein At5g60130 OS=Arabidopsis thaliana GN=At5g60130 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SUV79e-06C0SUV7_ARATH Putative uncharacterized protein At1g16640 (Fragment) OS=Arabidopsis thaliana GN=At1g16640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19554(3 genes,2 taxa):Arabidopsis thalianaAT5G60130.1
ORTHOMCL19554(3 genes,2 taxa):Arabidopsis thalianaAT5G60140.1
ORTHOMCL19554(3 genes,2 taxa):Brassica oleraceaBol008933
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:6778194..8342886 (-)A.thalianaChr5:23851905..24462536 (+)72
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G601422421618024217691Chr5Subgenome_I221
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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