Basic Information
Gene Model:Bol008888
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000242
Sequence:
 | 
Gene Structure
Nucleotide Length:3349 bp
Transcript Length:2184 bp
Protein Length:727 aa
Strand:+
Location:C03: 1205898 : 1209246
Gene CDSs(16): 1-186 | 250-406 | 471-610 | 679-826 | 930-1195 | 1268-1509 | 1594-1925 | 2006-2071 | 2170-2235 | 2315-2386 | 2468-2536 | 2608-2679 | 2759-2824 | 2898-2969 | 3039-3174 | 3256-3349 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 77 589 2.1e-172Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 77 589 2.1e-172Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 406 685 30.450IPR000719Protein kinase, catalytic domain
HMMPfamPF00069Pkinase 406 609 7.9e-23IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 190 211 0.98IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 143 165 0.0014IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 166 188 0.0038IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 28 70 8.6e-07IPR013210Leucine-rich repeat, N-terminal
Segsegseg 598 606 NANot foundNot found
Segsegseg 292 317 NANot foundNot found
Segsegseg 143 158 NANot foundNot found
Segsegseg 79 96 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 528 540 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00219no description 406 681 3.1e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 406 685 1e-15IPR002290Serine/threonine-protein kinase domain
superfamilySSF52058L domain-like 25 254 2.2e-30Not foundNot found
superfamilySSF56112Protein kinase-like 376 681 1e-64IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.10no description 486 692 4.4e-35Not foundNot found
Gene3DG3DSA:3.30.200.20no description 387 483 2.2e-17Not foundNot found
Gene3DG3DSA:3.80.10.10no description 25 244 5.1e-31Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9FG240.0SRF2_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0LGS70.0C0LGS7_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4134526e-52K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11941(7 genes,6 taxa):Arabidopsis thalianaAT5G06820.1
ORTHOMCL11941(7 genes,6 taxa):Brassica oleraceaBol008888
ORTHOMCL11941(7 genes,6 taxa):Brassica rapaBra005913
ORTHOMCL11941(7 genes,6 taxa):Brassica rapaBra009231
ORTHOMCL11941(7 genes,6 taxa):Vitis viniferaGSVIVT01033522001
ORTHOMCL11941(7 genes,6 taxa):Populus trichocarpaPOPTR_0006s20510.1
ORTHOMCL11941(7 genes,6 taxa):Carica papayaevm.TU.supercontig_85.86
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:767150..1781501 (+)B.rapaA10:2400264..3680955 (+)76
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0682021128692116754Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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