Basic Information
Gene Model:Bol008869
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000242
Sequence:
 | 
Gene Structure
Nucleotide Length:3478 bp
Transcript Length:2175 bp
Protein Length:724 aa
Strand:+
Location:C03: 1297330 : 1300807
Gene CDSs(8): 1-57 | 149-196 | 307-393 | 511-630 | 725-1888 | 2320-2396 | 2535-2966 | 3289-3478 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00448no description 1 97 0.0038IPR001789Signal transduction response regulator, receiver region
Segsegseg 153 164 NANot foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 184 239 1.4e-31IPR006447Myb-like DNA-binding region, SHAQKYF class
Gene3DG3DSA:3.40.50.2300no description 12 105 1.9e-11Not foundNot found
Gene3DG3DSA:1.10.10.60no description 180 243 2.7e-21IPR012287Homeodomain-related
ProfileScanPS50110RESPONSE_REGULATORY 1 101 17.767IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 186 236 2.5e-06IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 14 98 3.8e-14IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 10 105 1.3e-16IPR011006CheY-like
superfamilySSF46689Homeodomain-like 180 243 4.1e-18IPR009057Homeodomain-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 12 87 8.8e-08Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 12 87 8.8e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LYP51e-146ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9R9G82e-48B9R9G8_RICCO Two-component system sensor histidine kinase/response regulator, putative OS=Ricinus communis GN=RCOM_1497420 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G072101e-158K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2981(13 genes,6 taxa):Arabidopsis thalianaAT2G27070.1
ORTHOMCL2981(13 genes,6 taxa):Arabidopsis thalianaAT5G07210.1
ORTHOMCL2981(13 genes,6 taxa):Brassica oleraceaBol008869
ORTHOMCL2981(13 genes,6 taxa):Brassica oleraceaBol024533
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra005928
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra009284
ORTHOMCL2981(13 genes,6 taxa):Brassica rapaBra028705
ORTHOMCL2981(13 genes,6 taxa):Vitis viniferaGSVIVT01010626001
ORTHOMCL2981(13 genes,6 taxa):Vitis viniferaGSVIVT01010627001
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0012s13900.1
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0012s13900.2
ORTHOMCL2981(13 genes,6 taxa):Populus trichocarpaPOPTR_0015s13860.1
ORTHOMCL2981(13 genes,6 taxa):Carica papayaevm.TU.supercontig_107.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1231571..1545915 (-)A.thalianaChr5:24472639..24915214 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1242098..1419068 (+)B.rapaA10:3025068..3253844 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0721022522372256018Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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