Basic Information
Gene Model:Bol008738
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000243
Sequence:
 | 
Gene Structure
Nucleotide Length:1571 bp
Transcript Length:474 bp
Protein Length:157 aa
Strand:+
Location:C08: 22299397 : 22300967
Gene CDSs(4): 1-175 | 930-1000 | 1258-1334 | 1421-1571 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2300no description 19 127 9.1e-11Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 26 127 12.367IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00072Response_reg 27 123 4.7e-05IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 1 132 1.7e-07Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 1 132 1.7e-07Not foundNot found
superfamilySSF52172CheY-like 22 144 2.6e-14IPR011006CheY-like
HMMSmartSM00448no description 25 126 0.0059IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SB042e-74ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q0WW392e-73Q0WW39_ARATH Response reactor 2 OS=Arabidopsis thaliana GN=At3g48100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G481002e-74K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:22001395..22464430 (+)B.rapaA06:7587745..8160779 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo