Basic Information
Gene Model:Bol008546
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000245
Sequence:
 | 
Gene Structure
Nucleotide Length:1416 bp
Transcript Length:846 bp
Protein Length:281 aa
Strand:+
Location:C03: 45063583 : 45064998
Gene CDSs(2): 1-738 | 1309-1416 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 229 281 1.9e-07IPR011598Helix-loop-helix DNA-binding
Segsegseg 164 178 NANot foundNot found
Segsegseg 211 220 NANot foundNot found
Segsegseg 224 241 NANot foundNot found
Segsegseg 28 40 NANot foundNot found
ProfileScanPS50888HLH 207 266 9.707IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ASX91e-82BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0Z2882e-81C0Z288_ARATH AT1G29950 protein OS=Arabidopsis thaliana GN=AT1G29950 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24022(2 genes,2 taxa):Brassica oleraceaBol008546
ORTHOMCL24022(2 genes,2 taxa):Brassica rapaBra010806
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43984041..45229545 (+)A.thalianaChr2:14268269..14573856 (+)24
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:44558246..45782742 (+)B.rapaA09:33625351..34848967 (+)49
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G299501049169810494598Chr1Subgenome_II145
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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