Basic Information
Gene Model:Bol008428
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000247
Sequence:
 | 
Gene Structure
Nucleotide Length:405 bp
Transcript Length:405 bp
Protein Length:134 aa
Strand:+
Location:C03: 43905433 : 43905837
Gene CDSs(1): 1-405 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 33 45 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FZ909e-50ERF87_ARATH Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23997(2 genes,2 taxa):Brassica oleraceaBol008428
ORTHOMCL23997(2 genes,2 taxa):Brassica rapaBra010901
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43707783..45782742 (+)A.thalianaChr1:9636594..10831482 (+)114
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43718915..44761567 (+)B.rapaA09:21725957..22850054 (+)34
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2816098393879840124Chr1Subgenome_II145
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo