Basic Information
Gene Model:Bol008407
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000247
Sequence:
 | 
Gene Structure
Nucleotide Length:519 bp
Transcript Length:519 bp
Protein Length:172 aa
Strand:-
Location:C03: 44225268 : 44225786
Gene CDSs(1): 1-519 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 23 80 23.973IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 22 73 1.3e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 90 104 NANot foundNot found
Segsegseg 133 153 NANot foundNot found
superfamilySSF54171DNA-binding domain 22 83 1.2e-23IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 23 86 3.7e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 22 83 1.6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C5I37e-45ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q09J761e-70Q09J76_BRARP Putative ethylene-responsive element binding factor OS=Brassica rapa subsp. pekinensis PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G152104e-26K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13792(5 genes,3 taxa):Arabidopsis thalianaAT1G28370.1
ORTHOMCL13792(5 genes,3 taxa):Brassica oleraceaBol008407
ORTHOMCL13792(5 genes,3 taxa):Brassica rapaBra010880
ORTHOMCL13792(5 genes,3 taxa):Brassica rapaBra032900
ORTHOMCL13792(5 genes,3 taxa):Brassica rapaBra032901
Tandem Duplication
ClusterGene Num.Gene List
Cluster_14532Bol008407 Bol008409 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43984041..45229545 (+)A.thalianaChr2:14268269..14573856 (+)24
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43718915..44761567 (+)B.rapaA09:21725957..22850054 (+)34
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2837099559699956940Chr1Subgenome_II145
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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