Basic Information
Gene Model:Bol008371
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000248
Sequence:
 | 
Gene Structure
Nucleotide Length:2253 bp
Transcript Length:1359 bp
Protein Length:452 aa
Strand:+
Location:C04: 16065872 : 16068124
Gene CDSs(10): 1-470 | 583-608 | 681-711 | 790-877 | 968-1113 | 1255-1299 | 1455-1558 | 1643-1770 | 1840-1938 | 2032-2253 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 231 288 15.277IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 139 195 17.820IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 138 198 1.3e-17IPR016177DNA-binding, integrase-type
superfamilySSF54171DNA-binding domain 230 291 1.9e-18IPR016177DNA-binding, integrase-type
Gene3DG3DSA:3.30.730.10no description 230 291 1.1e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 138 198 1.2e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 171 182 NANot foundNot found
Segsegseg 65 74 NANot foundNot found
Segsegseg 118 125 NANot foundNot found
Segsegseg 129 138 NANot foundNot found
HMMPfamPF00847AP2 138 188 6.2e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 230 281 5.4e-13IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 231 294 2.6e-29IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 139 201 1.2e-32IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SK030.0RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SW781e-105B9SW78_RICCO Protein AINTEGUMENTA, putative OS=Ricinus communis GN=RCOM_0328910 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G285500.0K09284AP2AP2-like factor, euAP2 lineage
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4679(11 genes,8 taxa):Arabidopsis thalianaAT2G28550.1
ORTHOMCL4679(11 genes,8 taxa):Brassica oleraceaBol008371
ORTHOMCL4679(11 genes,8 taxa):Brassica rapaBra011939
ORTHOMCL4679(11 genes,8 taxa):Vitis viniferaGSVIVT01025100001
ORTHOMCL4679(11 genes,8 taxa):Vitis viniferaGSVIVT01025548001
ORTHOMCL4679(11 genes,8 taxa):Oryza sativaOs07t0235800-01
ORTHOMCL4679(11 genes,8 taxa):Populus trichocarpaPOPTR_0006s13460.1
ORTHOMCL4679(11 genes,8 taxa):Populus trichocarpaPOPTR_0016s08530.1
ORTHOMCL4679(11 genes,8 taxa):Sorghum bicolorSb02g007000.1
ORTHOMCL4679(11 genes,8 taxa):Carica papayaevm.TU.supercontig_114.55
ORTHOMCL4679(11 genes,8 taxa):Carica papayaevm.TU.supercontig_139.43
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:15498209..16254189 (-)A.thalianaChr2:12156130..12433595 (+)28
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:15623758..16254189 (+)B.rapaA07:1081313..1368959 (+)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G285501222595112228543Chr2Subgenome_III(LF)21
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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