Basic Information
Gene Model:Bol008347
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000248
Sequence:
 | 
Gene Structure
Nucleotide Length:2301 bp
Transcript Length:2028 bp
Protein Length:675 aa
Strand:+
Location:C04: 15581931 : 15584231
Gene CDSs(4): 1-1533 | 1616-1729 | 1840-2104 | 2186-2301 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 393 607 1.3e-20IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 225 670 1.4e-154IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 225 670 1.4e-154Not foundNot found
Gene3DG3DSA:3.60.40.10no description 262 670 3.5e-43IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 226 668 2.8e-49IPR001932Protein phosphatase 2C-related
Segsegseg 96 107 NANot foundNot found
Segsegseg 363 376 NANot foundNot found
Segsegseg 61 65 NANot foundNot found
HMMSmartSM00332no description 246 664 4.5e-78IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9ZV250.0P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HPH60.0B9HPH6_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_723282 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5840181e-17K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT1G07630.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT2G28890.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT3G09400.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT5G02400.1
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol000589
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol008347
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol011309
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol023399
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol033926
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol041143
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra001308
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra009593
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra029766
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra030695
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra041012
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01024976001
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01034176001
ORTHOMCL626(24 genes,8 taxa):Oryza sativaOs03t0821300-01
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.2
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0006s08520.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0009s03590.1
ORTHOMCL626(24 genes,8 taxa):Sorghum bicolorSb01g003190.1
ORTHOMCL626(24 genes,8 taxa):Carica papayaevm.TU.supercontig_81.160
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:15498209..16254189 (-)A.thalianaChr2:12156130..12433595 (+)28
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:15200876..16254189 (+)B.rapaA04:9624523..10217689 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G288901240559612408235Chr2Subgenome_III(LF)21
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo