Basic Information
Gene Model:Bol008265
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000250
Sequence:
 | 
Gene Structure
Nucleotide Length:689 bp
Transcript Length:540 bp
Protein Length:179 aa
Strand:+
Location:C04: 18571287 : 18571975
Gene CDSs(2): 1-7 | 157-689 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 78 140 9.2e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 78 140 1.5e-23IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 78 130 1.2e-18IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 79 143 4.1e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 112 126 NANot foundNot found
Segsegseg 2 29 NANot foundNot found
ProfileScanPS51032AP2_ERF 79 137 22.036IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8VYM02e-80ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6ZLB22e-43C6ZLB2_BRAOG Ethylene-responsive factor (Fragment) OS=Brassica oleracea var. gemmifera PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G232403e-35K14516ERF1ethylene-responsive transcription factor 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23983(2 genes,2 taxa):Brassica oleraceaBol008265
ORTHOMCL23983(2 genes,2 taxa):Brassica rapaBra018271
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:17606709..18889101 (+)A.thalianaChr2:12931219..13416536 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:17815647..18845228 (+)B.rapaA10:16821039..17328952 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G312301330659313307475Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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