Basic Information
Gene Model:Bol008152
Gene Family:U-box Gene Family
Chromosome:C01
Scaffold:Scaffold000251
Sequence:
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Gene Structure
Nucleotide Length:1584 bp
Transcript Length:1356 bp
Protein Length:451 aa
Strand:-
Location:C01: 38471230 : 38472813
Gene CDSs(2): 1-291 | 520-1584 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00514Arm 279 319 0.00011IPR000225Armadillo
HMMPfamPF04564U-box 73 143 1.8e-27IPR003613U box domain
HMMPfamPF00514Arm 237 278 0.0019IPR000225Armadillo
superfamilySSF57850RING/U-box 55 140 4.9e-10Not foundNot found
superfamilySSF48371ARM repeat 114 443 3.7e-43IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 161 450 1.9e-25IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 70 147 3.7e-25Not foundNot found
Coilcoilcoiled-coil 14 38 NANot foundNot found
HMMPantherPTHR22849WDSAM1 PROTEIN 75 155 3e-10Not foundNot found
Segsegseg 16 30 NANot foundNot found
HMMSmartSM00185no description 237 278 7.7IPR000225Armadillo
HMMSmartSM00185no description 279 319 7.1IPR000225Armadillo
HMMSmartSM00504no description 77 140 5.2e-30IPR003613U box domain
HMMSmartSM00185no description 202 235 2.6e+02IPR000225Armadillo
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9SRT00.0PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9T5I01e-167B9T5I0_RICCO Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0379340 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ago:AGOS_AEL048W6e-08K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1774(16 genes,8 taxa):Arabidopsis thalianaAT3G07360.1
ORTHOMCL1774(16 genes,8 taxa):Brassica oleraceaBol007667
ORTHOMCL1774(16 genes,8 taxa):Brassica oleraceaBol008152
ORTHOMCL1774(16 genes,8 taxa):Brassica oleraceaBol033996
ORTHOMCL1774(16 genes,8 taxa):Brassica rapaBra001247
ORTHOMCL1774(16 genes,8 taxa):Brassica rapaBra029642
ORTHOMCL1774(16 genes,8 taxa):Brassica rapaBra040374
ORTHOMCL1774(16 genes,8 taxa):Vitis viniferaGSVIVT01007275001
ORTHOMCL1774(16 genes,8 taxa):Vitis viniferaGSVIVT01026372001
ORTHOMCL1774(16 genes,8 taxa):Oryza sativaOs02t0488600-01
ORTHOMCL1774(16 genes,8 taxa):Populus trichocarpaPOPTR_0002s25000.1
ORTHOMCL1774(16 genes,8 taxa):Populus trichocarpaPOPTR_0013s04900.1
ORTHOMCL1774(16 genes,8 taxa):Populus trichocarpaPOPTR_0013s04930.1
ORTHOMCL1774(16 genes,8 taxa):Populus trichocarpaPOPTR_0019s04500.1
ORTHOMCL1774(16 genes,8 taxa):Sorghum bicolorSb04g019280.1
ORTHOMCL1774(16 genes,8 taxa):Carica papayaevm.TU.supercontig_8.93
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:38200135..38750671 (-)A.thalianaChr3:2004144..2578246 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:38362657..38750671 (+)B.rapaA06:17716903..18160618 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G0736023547212356839Chr3Subgenome_I60
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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