Basic Information
Gene Model:Bol008094
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000252
Sequence:
 | 
Gene Structure
Nucleotide Length:696 bp
Transcript Length:696 bp
Protein Length:231 aa
Strand:-
Location:C02: 42177682 : 42178377
Gene CDSs(1): 1-696 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00010HLH 124 171 2.7e-05IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 127 176 8.3e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 114 171 11.798IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 111 181 2.1e-11IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR12565STEROL REGULATORY EL 131 171 2.7e-06Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 131 171 2.7e-06Not foundNot found
Segsegseg 131 147 NANot foundNot found
Segsegseg 182 219 NANot foundNot found
Segsegseg 29 33 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FHA71e-79HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6TJ683e-51C6TJ68_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G013109e-17K10863APTXaprataxin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4241(12 genes,8 taxa):Arabidopsis thalianaAT5G67060.1
ORTHOMCL4241(12 genes,8 taxa):Brassica oleraceaBol008094
ORTHOMCL4241(12 genes,8 taxa):Brassica rapaBra036801
ORTHOMCL4241(12 genes,8 taxa):Vitis viniferaGSVIVT01009479001
ORTHOMCL4241(12 genes,8 taxa):Oryza sativaOs08t0471401-00
ORTHOMCL4241(12 genes,8 taxa):Populus trichocarpaPOPTR_0002s12660.1
ORTHOMCL4241(12 genes,8 taxa):Populus trichocarpaPOPTR_0005s18210.1
ORTHOMCL4241(12 genes,8 taxa):Populus trichocarpaPOPTR_0007s10950.1
ORTHOMCL4241(12 genes,8 taxa):Populus trichocarpaPOPTR_0014s02720.1
ORTHOMCL4241(12 genes,8 taxa):Sorghum bicolorSb07g022920.1
ORTHOMCL4241(12 genes,8 taxa):Carica papayaevm.TU.supercontig_49.31
ORTHOMCL4241(12 genes,8 taxa):Carica papayaevm.TU.supercontig_55.141
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42027234..42286250 (-)A.thalianaChr5:26603003..26965996 (+)28
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41656315..42286250 (+)B.rapaA09:9226386..9717946 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo