Basic Information
Gene Model:Bol008047
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000252
Sequence:
 | 
Gene Structure
Nucleotide Length:1488 bp
Transcript Length:906 bp
Protein Length:301 aa
Strand:-
Location:C02: 41750861 : 41752348
Gene CDSs(4): 1-90 | 226-597 | 960-1014 | 1100-1488 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 78 166 10.230IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 95 166 1.6e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 75 96 NANot foundNot found
Segsegseg 75 84 NANot foundNot found
Segsegseg 36 50 NANot foundNot found
HMMSmartSM00353no description 100 171 0.0054IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 84 183 3.6e-11IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FKQ63e-82BH099_ARATH Transcription factor bHLH99 OS=Arabidopsis thaliana GN=BHLH99 PE=2 SV=1
TrEMBL
Best HitE_value Description
A3ABJ91e-46A3ABJ9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_08458 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19614(3 genes,3 taxa):Arabidopsis thalianaAT5G65320.1
ORTHOMCL19614(3 genes,3 taxa):Brassica oleraceaBol008047
ORTHOMCL19614(3 genes,3 taxa):Brassica rapaBra031865
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41565359..42022866 (+)A.thalianaChr5:25955381..26369751 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41656315..42286250 (+)B.rapaA09:9226386..9717946 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G653202610716926108726Chr5Subgenome_II40
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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