Basic Information
Gene Model:Bol008036
Gene Family:U-box Gene Family
Chromosome:C02
Scaffold:Scaffold000252
Sequence:
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Gene Structure
Nucleotide Length:1659 bp
Transcript Length:1659 bp
Protein Length:552 aa
Strand:-
Location:C02: 41702893 : 41704551
Gene CDSs(1): 1-1659 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00185no description 372 410 68IPR000225Armadillo
HMMSmartSM00185no description 411 461 37IPR000225Armadillo
HMMSmartSM00185no description 289 329 6.1IPR000225Armadillo
HMMSmartSM00185no description 330 371 22IPR000225Armadillo
HMMSmartSM00504no description 33 98 4e-14IPR003613U box domain
superfamilySSF48371ARM repeat 224 503 1.5e-40IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 26 105 2.1e-09Not foundNot found
Gene3DG3DSA:1.25.10.10no description 220 502 8e-36IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 26 105 1.1e-14Not foundNot found
Coilcoilcoiled-coil 491 512 NANot foundNot found
HMMPantherPTHR23315:SF8VACUOLAR PROTEIN 8-R 269 394 8.4e-10Not foundNot found
HMMPantherPTHR23315BETA CATENIN-RELATED 269 394 8.4e-10Not foundNot found
HMMPfamPF00514Arm 289 329 0.00053IPR000225Armadillo
HMMPfamPF00514Arm 330 371 0.026IPR000225Armadillo
HMMPfamPF04564U-box 31 57 6.6e-12IPR003613U box domain
Segsegseg 507 515 NANot foundNot found
Segsegseg 432 450 NANot foundNot found
Segsegseg 471 485 NANot foundNot found
Segsegseg 13 29 NANot foundNot found
Segsegseg 197 222 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9FJP60.0PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RB821e-166B9RB82_RICCO Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1512460 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
kla:KLLA0A11286g1e-11K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10845(8 genes,7 taxa):Arabidopsis thalianaAT5G65200.1
ORTHOMCL10845(8 genes,7 taxa):Brassica oleraceaBol008036
ORTHOMCL10845(8 genes,7 taxa):Brassica rapaBra031875
ORTHOMCL10845(8 genes,7 taxa):Oryza sativaOs09t0386200-01
ORTHOMCL10845(8 genes,7 taxa):Populus trichocarpaPOPTR_0012s07790.1
ORTHOMCL10845(8 genes,7 taxa):Populus trichocarpaPOPTR_0015s08250.1
ORTHOMCL10845(8 genes,7 taxa):Sorghum bicolorSb02g023920.1
ORTHOMCL10845(8 genes,7 taxa):Carica papayaevm.TU.supercontig_35.52
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41565359..42022866 (+)A.thalianaChr5:25955381..26369751 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41656315..42286250 (+)B.rapaA09:9226386..9717946 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G652002604806526049952Chr5Subgenome_II40
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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