Basic Information
Gene Model:Bol008002
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000253
Sequence:
 | 
Gene Structure
Nucleotide Length:660 bp
Transcript Length:660 bp
Protein Length:219 aa
Strand:-
Location:C08: 27101193 : 27101852
Gene CDSs(1): 1-660 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00010HLH 125 172 2.7e-05IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 132 172 2.7e-06Not foundNot found
HMMPantherPTHR12565STEROL REGULATORY EL 132 172 2.7e-06Not foundNot found
Segsegseg 132 148 NANot foundNot found
Segsegseg 37 50 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 118 196 2.2e-12IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 116 172 11.618IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 128 177 8.3e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9SND41e-75HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6TJ687e-44C6TJ68_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G013108e-17K10863APTXaprataxin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14156(5 genes,3 taxa):Arabidopsis thalianaAT3G50330.1
ORTHOMCL14156(5 genes,3 taxa):Brassica oleraceaBol008002
ORTHOMCL14156(5 genes,3 taxa):Brassica oleraceaBol030860
ORTHOMCL14156(5 genes,3 taxa):Brassica rapaBra030002
ORTHOMCL14156(5 genes,3 taxa):Brassica rapaBra036071
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:26675307..27362354 (-)A.thalianaChr5:26681495..26957743 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:26338160..27362354 (+)B.rapaA09:18799880..19329668 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo