Basic Information
Gene Model:Bol007999
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000253
Sequence:
 | 
Gene Structure
Nucleotide Length:489 bp
Transcript Length:489 bp
Protein Length:162 aa
Strand:+
Location:C08: 27055411 : 27055899
Gene CDSs(1): 1-489 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 27 84 22.906IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 26 87 1.9e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 26 77 1.1e-18IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 26 87 2.4e-22IPR016177DNA-binding, integrase-type
Segsegseg 5 21 NANot foundNot found
HMMSmartSM00380no description 27 90 1.1e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SNE16e-63ERF11_ARATH Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9R7898e-39B9R789_RICCO Dehydration-responsive element-binding protein 1B, putative OS=Ricinus communis GN=RCOM_1589590 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G369002e-41K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18594(3 genes,3 taxa):Arabidopsis thalianaAT3G50260.1
ORTHOMCL18594(3 genes,3 taxa):Brassica oleraceaBol007999
ORTHOMCL18594(3 genes,3 taxa):Brassica rapaBra036061
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:26675307..27362354 (-)A.thalianaChr5:26681495..26957743 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:26338160..27362354 (+)B.rapaA09:18799880..19329668 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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