Basic Information
Gene Model:Bol007816
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000256
Sequence:
 | 
Gene Structure
Nucleotide Length:3677 bp
Transcript Length:2043 bp
Protein Length:680 aa
Strand:+
Location:Scaffold000256: 643911 : 647587
Gene CDSs(12): 1-115 | 577-629 | 717-872 | 962-1046 | 1118-1208 | 1311-1475 | 1590-1709 | 1841-1916 | 1993-2164 | 2252-3162 | 3254-3282 | 3608-3677 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF06507Auxin_resp 205 287 3.5e-57IPR010525Auxin response factor
HMMPfamPF02362B3 78 183 2.4e-32IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 66 195 6.7e-43Not foundNot found
Segsegseg 392 403 NANot foundNot found
Segsegseg 309 316 NANot foundNot found
Segsegseg 6 30 NANot foundNot found
Segsegseg 67 72 NANot foundNot found
ProfileScanPS50863B3 79 181 11.420IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q94JM30.0ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q6KBS40.0Q6KBS4_BRANA Putative auxin response factor OS=Brassica napus GN=ARF2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8283211e-126K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL684(24 genes,8 taxa):Arabidopsis thalianaAT5G62000.1
ORTHOMCL684(24 genes,8 taxa):Brassica oleraceaBol007816
ORTHOMCL684(24 genes,8 taxa):Brassica oleraceaBol019214
ORTHOMCL684(24 genes,8 taxa):Brassica rapaBra010048
ORTHOMCL684(24 genes,8 taxa):Brassica rapaBra035910
ORTHOMCL684(24 genes,8 taxa):Vitis viniferaGSVIVT01004942001
ORTHOMCL684(24 genes,8 taxa):Vitis viniferaGSVIVT01008639001
ORTHOMCL684(24 genes,8 taxa):Oryza sativaOs01t0927600-01
ORTHOMCL684(24 genes,8 taxa):Oryza sativaOs12t0479400-01
ORTHOMCL684(24 genes,8 taxa):Oryza sativaOs12t0479400-02
ORTHOMCL684(24 genes,8 taxa):Oryza sativaOs12t0479400-03
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s13110.1
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.1
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.2
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.3
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.4
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.5
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0003s16210.6
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0012s10790.1
ORTHOMCL684(24 genes,8 taxa):Populus trichocarpaPOPTR_0015s11660.1
ORTHOMCL684(24 genes,8 taxa):Sorghum bicolorSb05g019540.1
ORTHOMCL684(24 genes,8 taxa):Sorghum bicolorSb08g014320.1
ORTHOMCL684(24 genes,8 taxa):Carica papayaevm.TU.contig_31756.1
ORTHOMCL684(24 genes,8 taxa):Carica papayaevm.TU.contig_38023.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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