Basic Information
Gene Model:Bol007781
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000256
Sequence:
 | 
Gene Structure
Nucleotide Length:1964 bp
Transcript Length:1296 bp
Protein Length:431 aa
Strand:-
Location:Scaffold000256: 334188 : 336151
Gene CDSs(2): 1-549 | 1218-1964 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22950AMINO ACID TRANSPORT 31 427 4.8e-98Not foundNot found
HMMPfamPF01490Aa_trans 40 424 3.5e-73IPR013057Amino acid transporter, transmembrane
Segsegseg 350 361 NANot foundNot found
Segsegseg 198 211 NANot foundNot found
Segsegseg 66 88 NANot foundNot found
Segsegseg 9 23 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q811P02e-35S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FKY30.0Q9FKY3_ARATH Amino acid transporter protein-like OS=Arabidopsis thaliana GN=At5g65990 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_2082721e-161K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19624(3 genes,3 taxa):Arabidopsis thalianaAT5G65990.1
ORTHOMCL19624(3 genes,3 taxa):Brassica oleraceaBol007781
ORTHOMCL19624(3 genes,3 taxa):Brassica rapaBra029326
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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