Basic Information
Gene Model:Bol007780
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000256
Sequence:
 | 
Gene Structure
Nucleotide Length:1564 bp
Transcript Length:885 bp
Protein Length:294 aa
Strand:+
Location:Scaffold000256: 325748 : 327311
Gene CDSs(4): 1-462 | 752-845 | 928-1058 | 1367-1564 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50192T_SNARE 229 291 14.621IPR000727Target SNARE coiled-coil region
Coilcoilcoiled-coil 274 295 NANot foundNot found
HMMPantherPTHR19305SYNAPTOSOMAL ASSOCIA 34 294 3.5e-53Not foundNot found
HMMPfamPF00835SNAP-25 172 233 2.1e-13IPR000928SNAP-25
HMMPfamPF05739SNARE 234 294 2.1e-10IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.5.110no description 228 293 6.4e-18Not foundNot found
Gene3DG3DSA:1.20.5.110no description 86 164 1.3e-06Not foundNot found
Segsegseg 60 73 NANot foundNot found
Segsegseg 236 249 NANot foundNot found
HMMSmartSM00397no description 224 291 0.00036IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 93 162 0.69IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9S7P91e-139SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9IE111e-110B9IE11_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_824554 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G612101e-139K08509SNAP29synaptosomal-associated protein, 29kDa
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23927(2 genes,2 taxa):Brassica oleraceaBol007780
ORTHOMCL23927(2 genes,2 taxa):Brassica rapaBra029328
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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