Basic Information
Gene Model:Bol007650
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000258
Sequence:
 | 
Gene Structure
Nucleotide Length:12645 bp
Transcript Length:5739 bp
Protein Length:1912 aa
Strand:+
Location:C05: 32320135 : 32332779
Gene CDSs(51): 1-237 | 328-510 | 606-656 | 980-1099 | 1204-1306 | 1385-1543 | 1652-1740 | 1812-1925 | 2211-2369 | 2456-2503 | 2766-2942 | 3013-3065 | 3160-3272 | 3358-3441 | 3522-3643 | 3898-4017 | 4184-4298 | 4386-4563 | 4642-4710 | 4830-4961 | 5089-5198 | 5286-5446 | 5532-5622 | 5714-5811 | 5995-6115 | 6201-6358 | 6498-6579 | 6689-6783 | 6905-6926 | 7032-7117 | 7220-7306 | 7556-7605 | 7881-7962 | 8305-8365 | 8603-8655 | 8746-8935 | 9053-9176 | 9264-9381 | 9553-9675 | 9992-10070 | 10143-10219 | 10343-10486 | 10634-10751 | 10826-10923 | 11232-11321 | 11396-11521 | 11608-11718 | 11817-11913 | 12020-12174 | 12265-12362 | 12438-12645 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 22 34 NANot foundNot found
Segsegseg 1706 1715 NANot foundNot found
HMMPfamPF02364Glucan_synthase 1032 1790 8.3e-256IPR003440Glycosyl transferase, family 48
Coilcoilcoiled-coil 862 883 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000148 Cellular Component 1,3-beta-glucan synthase complex
GO:0003843 Molecular Function 1,3-beta-glucan synthase activity
GO:0006075 Biological Process 1,3-beta-glucan biosynthetic process
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SFU60.0CALS9_ARATH Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9XEG10.0Q9XEG1_GOSHI Putative callose synthase catalytic subunit OS=Gossypium hirsutum GN=CFL1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G071600.0K11000CALScallose synthase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G05570.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G06490.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G13680.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G31960.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G36850.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G07160.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G59100.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G03550.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G04970.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G13000.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G36870.1
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol001670
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol002814
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol003544
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol004161
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol005100
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol006691
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol007650
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol008141
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol014106
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol019328
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol020665
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol023771
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032168
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032652
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol034005
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol040999
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol041063
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol043468
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra001239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra003364
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005620
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005624
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra008864
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015436
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015504
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra023386
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra027328
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029541
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029628
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra032416
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra034218
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra037213
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra040364
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01000622001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01001361001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01005204001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01007560001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020548001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020854001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025362001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025370001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025372001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01026489001
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533000-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-03
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-04
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0247050-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0182300-01
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04930.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04940.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s23710.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0002s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0003s21690.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.2
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s05210.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s09740.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0013s13490.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10080.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10090.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g048630.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g049270.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050470.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050480.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023490.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023520.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g030800.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g034880.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g008830.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g038510.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g005550.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g030970.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_189.9
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_2050.3
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_25.167
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_3407.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_452.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.97
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.98
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_714.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_858.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_973.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:32019715..32710477 (-)A.thalianaChr3:1969121..2487024 (+)89
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31893584..32710477 (+)B.rapaA05:670747..1309656 (-)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G0716022649452279383Chr3Subgenome_III(LF)141
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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