Basic Information
Gene Model:Bol007534
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000259_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:657 bp
Transcript Length:657 bp
Protein Length:218 aa
Strand:+
Location:Scaffold000259_P1: 37396 : 38052
Gene CDSs(1): 1-657 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 91 191 1.8e-07IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZR142e-31Y4317_ARATH Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9N1E33e-21B9N1E3_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_579432 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23890(2 genes,2 taxa):Brassica oleraceaBol007534
ORTHOMCL23890(2 genes,2 taxa):Brassica rapaBra004985
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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