Basic Information
Gene Model:Bol007475
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000260
Sequence:
 | 
Gene Structure
Nucleotide Length:507 bp
Transcript Length:507 bp
Protein Length:168 aa
Strand:+
Location:Scaffold000260: 248990 : 249496
Gene CDSs(1): 1-507 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.5.170no description 29 83 0.00054Not foundNot found
Segsegseg 3 22 NANot foundNot found
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 33 71 5e-05Not foundNot found
HMMPantherPTHR22952:SF11CAMP-RESPONSE ELEMEN 33 71 5e-05Not foundNot found
HMMPfamPF00170bZIP_1 25 88 4.1e-11IPR011616bZIP transcription factor, bZIP-1
HMMSmartSM00338no description 25 89 4.3e-17IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 32 47 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 27 90 10.151IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 45 73 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240681e-16OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9SI151e-65Q9SI15_ARATH Putative bZIP transcription factor OS=Arabidopsis thaliana GN=At2g18160 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540831e-27K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14522(5 genes,4 taxa):Brassica oleraceaBol007475
ORTHOMCL14522(5 genes,4 taxa):Brassica rapaBra037235
ORTHOMCL14522(5 genes,4 taxa):Populus trichocarpaPOPTR_0005s12130.1
ORTHOMCL14522(5 genes,4 taxa):Populus trichocarpaPOPTR_0007s13380.1
ORTHOMCL14522(5 genes,4 taxa):Carica papayaevm.TU.supercontig_6.171
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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