Basic Information
Gene Model:Bol007467
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000260
Sequence:
 | 
Gene Structure
Nucleotide Length:1413 bp
Transcript Length:996 bp
Protein Length:331 aa
Strand:-
Location:Scaffold000260: 100708 : 102120
Gene CDSs(6): 1-57 | 152-292 | 380-451 | 533-667 | 749-949 | 1024-1413 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 183 258 1.8e-14IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 193 243 4.7e-09IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 188 238 1.1e-05IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR12565STEROL REGULATORY EL 147 237 0.00016Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 147 237 0.00016Not foundNot found
Segsegseg 126 150 NANot foundNot found
Segsegseg 36 47 NANot foundNot found
ProfileScanPS50888HLH 181 238 11.716IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 183 264 2.1e-08IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ZPW31e-140BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3
TrEMBL
Best HitE_value Description
B9MXN11e-47B9MXN1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_593925 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095303e-11K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7565(9 genes,6 taxa):Arabidopsis thalianaAT2G18300.2
ORTHOMCL7565(9 genes,6 taxa):Brassica oleraceaBol007467
ORTHOMCL7565(9 genes,6 taxa):Brassica oleraceaBol012482
ORTHOMCL7565(9 genes,6 taxa):Brassica rapaBra024474
ORTHOMCL7565(9 genes,6 taxa):Brassica rapaBra037226
ORTHOMCL7565(9 genes,6 taxa):Vitis viniferaGSVIVT01018942001
ORTHOMCL7565(9 genes,6 taxa):Populus trichocarpaPOPTR_0005s12370.1
ORTHOMCL7565(9 genes,6 taxa):Populus trichocarpaPOPTR_0007s13020.1
ORTHOMCL7565(9 genes,6 taxa):Carica papayaevm.TU.supercontig_6.128
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo