Basic Information |
Gene Model: | Bol007467 |
Gene Family: | Transcription Factor Families |
Chromosome: | Cun |
Scaffold: | Scaffold000260 |
Sequence: | |
Gene Structure |
|
Nucleotide Length: | 1413 bp |
Transcript Length: | 996 bp |
Protein Length: | 331 aa |
Strand: | - |
Location: | Scaffold000260: 100708 : 102120 |
Gene CDSs(6): | 1-57 | 152-292 | 380-451 | 533-667 | 749-949 | 1024-1413 | |
Protein Sequence Features |
Interpro |
 |
Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | superfamily | SSF47459 | HLH, helix-loop-heli |
183 |
258 |
1.8e-14 | IPR011598 | Helix-loop-helix DNA-binding | HMMSmart | SM00353 | no description |
193 |
243 |
4.7e-09 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | HMMPfam | PF00010 | HLH |
188 |
238 |
1.1e-05 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | HMMPanther | PTHR12565 | STEROL REGULATORY EL |
147 |
237 |
0.00016 | Not found | Not found | HMMPanther | PTHR12565:SF7 | CENTROMERE-BINDING P |
147 |
237 |
0.00016 | Not found | Not found | Seg | seg | seg |
126 |
150 |
NA | Not found | Not found | Seg | seg | seg |
36 |
47 |
NA | Not found | Not found | ProfileScan | PS50888 | HLH |
181 |
238 |
11.716 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | Gene3D | G3DSA:4.10.280.10 | no description |
183 |
264 |
2.1e-08 | IPR011598 | Helix-loop-helix DNA-binding | |
Gene Ontology |
GO Term | GO Type | Description |
GO:0005634 |
Cellular Component |
nucleus | GO:0030528 |
Molecular Function |
transcription regulator activity | GO:0045449 |
Biological Process |
regulation of transcription |
|
Swiss-Prot |
Best Hit | E_value |
Description | Q9ZPW3 | 1e-140 | BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3 |
|
TrEMBL |
Best Hit | E_value |
Description | B9MXN1 | 1e-47 | B9MXN1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_593925 PE=4 SV=1 |
|
KEGG |
Best Hit | E_value | KO | EC or Symbol |
Description | ath:AT1G09530 | 3e-11 | K12126 | PIF3 | phytochrome-interacting factor 3 |
|
Gene Cluster |
Orthologs |
OrthoMCL Group | Species | Gene List | ORTHOMCL7565(9 genes,6 taxa): | Arabidopsis thaliana | AT2G18300.2 | ORTHOMCL7565(9 genes,6 taxa): | Brassica oleracea | Bol007467 | ORTHOMCL7565(9 genes,6 taxa): | Brassica oleracea | Bol012482 | ORTHOMCL7565(9 genes,6 taxa): | Brassica rapa | Bra024474 | ORTHOMCL7565(9 genes,6 taxa): | Brassica rapa | Bra037226 | ORTHOMCL7565(9 genes,6 taxa): | Vitis vinifera | GSVIVT01018942001 | ORTHOMCL7565(9 genes,6 taxa): | Populus trichocarpa | POPTR_0005s12370.1 | ORTHOMCL7565(9 genes,6 taxa): | Populus trichocarpa | POPTR_0007s13020.1 | ORTHOMCL7565(9 genes,6 taxa): | Carica papaya | evm.TU.supercontig_6.128 |
|
Tandem Duplication |
Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
Synteny Analysis |
Synteny Genes |
Note: This gene was not anchored on pseudo-chromosomes. |
Synteny Regions |
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
Trplicated Block |
Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|