| Basic Information |
| Gene Model: | Bol007467 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | Cun |
| Scaffold: | Scaffold000260 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 1413 bp |
| Transcript Length: | 996 bp |
| Protein Length: | 331 aa |
| Strand: | - |
| Location: | Scaffold000260: 100708 : 102120 |
| Gene CDSs(6): | 1-57 | 152-292 | 380-451 | 533-667 | 749-949 | 1024-1413 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | superfamily | SSF47459 | HLH, helix-loop-heli |
183 |
258 |
1.8e-14 | IPR011598 | Helix-loop-helix DNA-binding | | HMMSmart | SM00353 | no description |
193 |
243 |
4.7e-09 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPfam | PF00010 | HLH |
188 |
238 |
1.1e-05 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPanther | PTHR12565 | STEROL REGULATORY EL |
147 |
237 |
0.00016 | Not found | Not found | | HMMPanther | PTHR12565:SF7 | CENTROMERE-BINDING P |
147 |
237 |
0.00016 | Not found | Not found | | Seg | seg | seg |
126 |
150 |
NA | Not found | Not found | | Seg | seg | seg |
36 |
47 |
NA | Not found | Not found | | ProfileScan | PS50888 | HLH |
181 |
238 |
11.716 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | Gene3D | G3DSA:4.10.280.10 | no description |
183 |
264 |
2.1e-08 | IPR011598 | Helix-loop-helix DNA-binding | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0005634 |
Cellular Component |
nucleus | | GO:0030528 |
Molecular Function |
transcription regulator activity | | GO:0045449 |
Biological Process |
regulation of transcription |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9ZPW3 | 1e-140 | BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | B9MXN1 | 1e-47 | B9MXN1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_593925 PE=4 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | | ath:AT1G09530 | 3e-11 | K12126 | PIF3 | phytochrome-interacting factor 3 |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL7565(9 genes,6 taxa): | Arabidopsis thaliana | AT2G18300.2 | | ORTHOMCL7565(9 genes,6 taxa): | Brassica oleracea | Bol007467 | | ORTHOMCL7565(9 genes,6 taxa): | Brassica oleracea | Bol012482 | | ORTHOMCL7565(9 genes,6 taxa): | Brassica rapa | Bra024474 | | ORTHOMCL7565(9 genes,6 taxa): | Brassica rapa | Bra037226 | | ORTHOMCL7565(9 genes,6 taxa): | Vitis vinifera | GSVIVT01018942001 | | ORTHOMCL7565(9 genes,6 taxa): | Populus trichocarpa | POPTR_0005s12370.1 | | ORTHOMCL7565(9 genes,6 taxa): | Populus trichocarpa | POPTR_0007s13020.1 | | ORTHOMCL7565(9 genes,6 taxa): | Carica papaya | evm.TU.supercontig_6.128 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Note: This gene was not anchored on pseudo-chromosomes. |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
